emepyc / Blast2lcaLinks
Calculates the lowest common ancestors of each query sequence in a Blast result
☆31Updated 7 years ago
Alternatives and similar repositories for Blast2lca
Users that are interested in Blast2lca are comparing it to the libraries listed below
Sorting:
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 10 months ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆41Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- ☆23Updated 7 years ago
- ☆20Updated 8 years ago
- metag-rev-sup☆22Updated 8 years ago
- StrainFinder☆28Updated 7 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆53Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- de.NBI Nanopore Training Course☆20Updated last month
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Filter SAM file for soft and hard clipped alignments☆51Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago