emepyc / Blast2lca
Calculates the lowest common ancestors of each query sequence in a Blast result
☆31Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for Blast2lca
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- ☆23Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- StrainFinder☆27Updated 6 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆47Updated 2 years ago
- ☆21Updated 4 years ago
- ☆20Updated 7 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- A reference viral database (RVDB)☆26Updated 5 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- ☆30Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆17Updated 3 years ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- ☆12Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆43Updated 2 years ago
- metag-rev-sup☆22Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Metagenomic binning suite☆29Updated 2 years ago