dgrapov / devium

Related projects ⓘ

Alternatives and complementary repositories for devium

• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆20Updated 4 years ago
• SilasK / ipath3
  Python wrapper for ipath3
  ☆10Updated last year
• ProtProtocols / IsoProt
  Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
  ☆11Updated 5 years ago
• WMBEdmands / MetMSLine
  R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software
  ☆10Updated 7 years ago
• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 3 years ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆37Updated 5 years ago
• zhaoyanswill / RAPSearch2
  Reduced Alphabet based Protein similarity Search
  ☆40Updated 3 years ago
• jsychong / MetaboAnalystR
  ☆10Updated 5 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆20Updated 9 months ago
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 2 years ago
• kwanjeeraw / grinn
  a Graph database and R package for omic data integration
  ☆20Updated 8 years ago
• kbseah / genome-bin-tools
  Interactive tools for metagenome visualization and binning in R
  ☆28Updated 6 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated 6 months ago
• edamame-course / 2015-tutorials
  tutorials for 2015 EDAMAME
  ☆24Updated 7 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated last year
• kkdey / aRchaic
  Exploration, clustering, visualization and classification of DNA damage patterns
  ☆18Updated 3 years ago
• dib-lab / SSUsearch
  A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis
  ☆10Updated 8 years ago
• cannin / snp_plotter
  snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
  ☆18Updated 9 months ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆18Updated last month
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 3 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated 8 months ago
• 5c077 / ExpressionDB
  App for hosting gene expression/ontology data with Shiny
  ☆17Updated 6 years ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆27Updated 9 years ago
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 3 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• geraldinepascal / FROGS
  FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
  ☆25Updated 3 weeks ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆28Updated last year
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 6 years ago