Alternatives and similar repositories for BioDSL

Users that are interested in BioDSL are comparing it to the libraries listed below

• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 12 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆40Updated 6 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 6 years ago
• Kingsford-Group / bloomtree
  ☆73Updated 6 years ago
• smdabdoub / phylotoast
  Tools for phylogenetic data analysis including visualization and cluster-computing support.
  ☆14Updated 3 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• tanghaibao / trimReads
  Utility programs to trim or sort Illumina reads with adapter sequences
  ☆15Updated 12 years ago
• vsbuffalo / makefiles-in-bioinfo
  A talk on Makesfiles in bioinformatics
  ☆26Updated 12 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆15Updated 4 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated last year
• chapmanb / bcbio.variation
  Toolkit to analyze genomic variation data, built on the GATK with Clojure
  ☆66Updated 9 years ago
• rioualen / gene-regulation
  Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.
  ☆11Updated 7 years ago
• arq5x / ggd
  ☆43Updated 9 years ago
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 6 years ago
• ryanlayer / gqt
  A genotype query interface.
  ☆136Updated 4 years ago
• ekg / glia
  a string to graph aligner
  ☆41Updated 9 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 10 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆68Updated 2 months ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 4 years ago
• Molmed / checkQC
  CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
  ☆28Updated last month
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 4 years ago
• wurmlab / oswitch
  Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
  ☆76Updated 8 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 3 years ago