maasha / BioDSL
BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.
☆16Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for BioDSL
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 8 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- reference free variant assembly☆32Updated last year
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 6 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Updated 11 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Streaming sequence classification with web services ✓📌☆19Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆13Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- a string to graph aligner☆41Updated 8 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- This project has moved and will no longer be edited here. New link ->☆11Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- High throughput sequencing analysis tools☆30Updated 2 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Tools for bam file processing☆55Updated 9 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 4 years ago
- ☆26Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago