denizy / coraLinks
Compressive Read-mapping Accelerator
☆14Updated 9 years ago
Alternatives and similar repositories for cora
Users that are interested in cora are comparing it to the libraries listed below
Sorting:
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 8 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- reference free variant assembly☆34Updated 2 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- GBWT-based handle graph☆31Updated this week
- Archived version 1.0.2☆16Updated 6 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Hemang Parikh☆11Updated 10 years ago
- ☆36Updated 5 years ago
- Lightweight resources assembly algorithm☆19Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago