Alternatives and similar repositories for wgfast:

Users that are interested in wgfast are comparing it to the libraries listed below

• TGenNorth / NASP
  Northern Arizona SNP Pipeline
  ☆19Updated 5 months ago
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆11Updated 6 years ago
• chrisquince / StrainMetaSim
  Strain resolved metagenome simulator
  ☆13Updated 6 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 4 months ago
• nickloman / poredb
  ☆19Updated 8 years ago
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆18Updated 4 months ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 4 months ago
• mdcao / npReader
  Read nanopore sequence reads in real-time
  ☆14Updated 8 years ago
• EvdH0 / poreFUME
  Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing
  ☆12Updated 8 years ago
• nf-core / vipr
  Assembly and intrahost / low-frequency variant calling for viral samples
  ☆14Updated 5 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 10 months ago
• mmpust / raspir
  Raspir, the rare species identifier
  ☆11Updated last year
• Gardner-BinfLab / deltaBS
  Quantifying the significance of genetic variation using probabilistic profile-based methods.
  ☆19Updated 4 years ago
• SWIAI / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• linsalrob / partie
  PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…
  ☆25Updated 2 years ago
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• Askarbek-orakov / ASAR
  Advanced metagenomic Sequence Analysis in R
  ☆15Updated 6 years ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 6 years ago
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• aweimann / traitar
  ☆22Updated 2 years ago
• mdcao / npAnalysis
  Software for Nanopore Analysis
  ☆10Updated 7 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 7 months ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 3 years ago
• ncbi-gpipe / pgap
  (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
  ☆16Updated 6 years ago
• alexiswl / poreduck
  A comprehensive toolkit for running Oxford Nanopore's MinION
  ☆12Updated 6 years ago