jasonsahl / wgfastLinks
Whole genome focused array SNP typer
☆14Updated 3 months ago
Alternatives and similar repositories for wgfast
Users that are interested in wgfast are comparing it to the libraries listed below
Sorting:
- Northern Arizona SNP Pipeline☆20Updated 11 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 10 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 9 months ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Raspir, the rare species identifier☆11Updated last year
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Read contamination removal☆25Updated last year
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 10 months ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago