karel-brinda / NanoSim-HLinks
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
☆18Updated 3 years ago
Alternatives and similar repositories for NanoSim-H
Users that are interested in NanoSim-H are comparing it to the libraries listed below
Sorting:
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆70Updated 2 weeks ago
- Find Unique genomic Regions☆32Updated last month
- Pan-Genomic Matching Statistics☆54Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆27Updated 3 months ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- Python3 module for running MUMmer and reading the output☆33Updated 8 months ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- Index kmtricks bf matrices☆45Updated last month
- ☆27Updated 9 months ago
- ☆29Updated 4 years ago
- ☆67Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 3 months ago
- ☆30Updated last year
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆57Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 3 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago