karel-brinda / NanoSim-HView external linksLinks
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
☆18Sep 7, 2022Updated 3 years ago
Alternatives and similar repositories for NanoSim-H
Users that are interested in NanoSim-H are comparing it to the libraries listed below
Sorting:
- ☆13Jan 20, 2016Updated 10 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆123Oct 20, 2020Updated 5 years ago
- Visualization tool for (meta)genome assembly graphs☆24Feb 10, 2026Updated last week
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 5 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated 11 months ago
- Assembly Likelihood Estimator☆35Mar 18, 2023Updated 2 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated 11 months ago
- ☆12Jan 21, 2016Updated 10 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆20Jan 31, 2026Updated 2 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- Nanopore sequence read simulator☆287Feb 3, 2026Updated last week
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Feb 8, 2026Updated last week
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- The public repository for the Proteomic Data Commons UI and APIs☆17Jan 6, 2026Updated last month
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- Pan-Genomic Matching Statistics☆55Apr 3, 2024Updated last year
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 3 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆54Mar 31, 2023Updated 2 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- Variant call verification☆16May 12, 2025Updated 9 months ago
- compacted de Bruijn graph construction in low memory☆100Nov 4, 2025Updated 3 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated last year
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- ☆15Mar 7, 2016Updated 9 years ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆18Jun 27, 2025Updated 7 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 6 years ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago