karel-brinda / NanoSim-H
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
☆17Updated 2 years ago
Alternatives and similar repositories for NanoSim-H:
Users that are interested in NanoSim-H are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated last week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆51Updated 7 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆24Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Master of Pores 2☆23Updated last month
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Pan-Genomic Matching Statistics☆48Updated 9 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆33Updated last month
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- Linear-time de novo Long Read Assembler☆37Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆31Updated 4 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆22Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆24Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- ☆34Updated 4 years ago