karel-brinda / NanoSim-H

Related projects ⓘ

Alternatives and complementary repositories for NanoSim-H

• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 4 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆45Updated 3 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 4 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated this week
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 4 years ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆28Updated last year
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆24Updated 3 weeks ago
• benedictpaten / marginPhase
  ☆34Updated 4 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆49Updated 2 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆48Updated 7 months ago
• ndierckx / Sim-it
  Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
  ☆22Updated 11 months ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated last month
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆45Updated 5 years ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated last month
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆34Updated 9 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• epi2me-labs / wf-amplicon
  ☆20Updated this week
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 2 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆15Updated 2 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆31Updated 5 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆15Updated 7 months ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• nluhmann / BlastFrost
  ☆45Updated 3 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆27Updated 2 weeks ago