NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
☆18Sep 7, 2022Updated 3 years ago
Alternatives and similar repositories for NanoSim-H
Users that are interested in NanoSim-H are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆123Oct 20, 2020Updated 5 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- Nanopore sequence read simulator☆298Mar 12, 2026Updated last month
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated last month
- ☆14Jan 20, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Mar 13, 2025Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 7 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆17Nov 18, 2024Updated last year
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated last month
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 5 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 3 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 5 months ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- Visualization tool for (meta)genome assembly graphs☆46Apr 11, 2026Updated last week
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Pan-Genomic Matching Statistics☆56Apr 3, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assembly Likelihood Estimator☆35Mar 18, 2023Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 4 months ago
- Tools used to analyze data from nanopore-based experiments.☆31Feb 1, 2015Updated 11 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Nov 5, 2025Updated 5 months ago
- Variant call verification☆16May 12, 2025Updated 11 months ago
- Colinear block visualisation tool☆31Jan 17, 2024Updated 2 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆11Feb 16, 2021Updated 5 years ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆19Feb 23, 2026Updated last month
- A tool to detect acquired AMR genes directly from long read sequencing data.☆27Jan 31, 2026Updated 2 months ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆18Updated this week
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year