DistilProtBert implementation, a distilled version of ProtBert model.
☆16Sep 21, 2022Updated 3 years ago
Alternatives and similar repositories for DistilProtBert
Users that are interested in DistilProtBert are comparing it to the libraries listed below
Sorting:
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Apr 20, 2022Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆36Sep 2, 2025Updated 6 months ago
- Alignment-free structure prediction using protein language models☆22Nov 2, 2022Updated 3 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Feb 19, 2026Updated last month
- ☆110Mar 7, 2022Updated 4 years ago
- ☆15Oct 16, 2023Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 6 months ago
- A 3D-equivariant neural network for protein structure accuracy estimation☆22Feb 24, 2023Updated 3 years ago
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- ☆11Aug 5, 2020Updated 5 years ago
- ☆17Dec 10, 2022Updated 3 years ago
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆20May 23, 2025Updated 9 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- ☆26May 9, 2022Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Dec 28, 2020Updated 5 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆37Aug 7, 2023Updated 2 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆106Jun 16, 2021Updated 4 years ago
- An Autodesk Maya plugin for modelling DNA based structures☆19Jun 11, 2014Updated 11 years ago
- 《Nature》&《Science》发表的AI相关文章☆13Sep 7, 2021Updated 4 years ago
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.☆12Mar 17, 2025Updated last year
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Jan 24, 2023Updated 3 years ago
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆24Jun 21, 2023Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 3 years ago
- Steering Vector Repo from "Extracting Latent Steering Vectors from Pretrained Language Models" - ACL2022 Findings☆11Mar 14, 2022Updated 4 years ago
- Official release of the ProGen models☆693Aug 4, 2023Updated 2 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated last year
- ☆16Jul 13, 2022Updated 3 years ago
- Generate 3D transition state geometries with GNNs☆14Oct 13, 2020Updated 5 years ago
- Efficient Neural Network Loss Landscape Generation☆10Apr 26, 2019Updated 6 years ago
- SPACE: STRING proteins as complementary embeddings☆38Feb 18, 2026Updated last month
- Scalable Protein Language Model Finetuning with Distributed Learning and Advanced Training Techniques such as LoRA.☆34Apr 12, 2024Updated last year
- Official Code for AdvRush: Searching for Adversarially Robust Neural Architectures (ICCV '21)☆12Dec 27, 2021Updated 4 years ago
- Collection of notebooks exploring conv nets in detail.☆10Sep 14, 2017Updated 8 years ago
- Machine Translation Metrics Unit TesTing☆13Jun 4, 2016Updated 9 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆164Aug 24, 2023Updated 2 years ago
- This is the code of our work CISS Certified Robustness Against Natural Language Attacks by Causal Intervention published on ICML 2022☆11Dec 6, 2022Updated 3 years ago
- evaluate the sharpness of images,written in python☆10Aug 25, 2017Updated 8 years ago