yarongef / DistilProtBert
DistilProtBert implementation, a distilled version of ProtBert model.
☆15Updated 2 years ago
Alternatives and similar repositories for DistilProtBert
Users that are interested in DistilProtBert are comparing it to the libraries listed below
Sorting:
- ☆57Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Open source code for AlphaFold to extract protein embeddings☆26Updated 3 years ago
- Code for Fold2Seq paper from ICML 2021☆50Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 4 months ago
- Mono-repo for protein utilities.☆18Updated 3 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- ☆34Updated 3 years ago
- ☆36Updated 3 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆34Updated 4 years ago
- Ultra-fast in-silico structure mutation☆33Updated last month
- PaccMann models for protein language modeling☆42Updated 3 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆39Updated last month
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 4 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆35Updated 3 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 3 months ago
- ☆66Updated last month
- ☆47Updated 6 months ago
- ☆38Updated 4 months ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated last week
- ☆117Updated 9 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆71Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆30Updated 3 weeks ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated last year
- dMaSIF implementation for google colab☆32Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆98Updated 7 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆59Updated 9 months ago