BoevaLab / SV-BayLinks
Detection of structural variants in cancer mate-pair and paired-end data
☆13Updated 6 years ago
Alternatives and similar repositories for SV-Bay
Users that are interested in SV-Bay are comparing it to the libraries listed below
Sorting:
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Annotating principal splice isoforms☆16Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- sort genomic data☆36Updated 2 weeks ago
- What's The Function of these genes?☆22Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- ☆26Updated 5 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago