♥ Efficient Estimation of Evolutionary Distances
☆47Sep 8, 2026Updated last week
Alternatives and similar repositories for andi
Users that are interested in andi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Sep 8, 2026Updated last week
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated 3 months ago
- ☆53May 11, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- all methods related to Enterobase☆44Sep 4, 2024Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆37Sep 1, 2026Updated 2 weeks ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆29Jun 1, 2017Updated 9 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- ☆38Apr 14, 2022Updated 4 years ago
- Remove human reads from a sequencing run☆54Jun 29, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Genome size estimation from long read overlaps☆97Sep 8, 2026Updated last week
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 months ago
- Create a tree using Mash distances☆190Oct 24, 2023Updated 2 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Split k-mer analysis – version 2☆106Jul 9, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Visualization tool for (meta)genome assembly graphs☆50Updated this week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Aug 21, 2026Updated 3 weeks ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- High throughput sequencing analysis tools☆30Apr 21, 2025Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆47Jul 24, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Variant call verification☆19May 12, 2025Updated last year
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Feb 23, 2025Updated last year
- Randomly subsample sequencing reads or alignments☆275Sep 1, 2026Updated 2 weeks ago
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- "Reads to report" for public health and clinical microbiology☆145Dec 9, 2025Updated 9 months ago