EvolBioInf / andi
♥ Efficient Estimation of Evolutionary Distances
☆44Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for andi
- ☆34Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 6 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- ☆51Updated 3 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Recombination-free trees☆56Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 7 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Remove lambda phage reads from a fastq file☆28Updated last year
- Colinear block visualisation tool☆30Updated 10 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Conditional Reciprocal Best Blast☆40Updated 7 years ago
- catalog for long-read sequencing tools☆32Updated last year
- ☆26Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- Improved Phased Assembler☆28Updated 2 years ago