♥ Efficient Estimation of Evolutionary Distances
☆47Feb 15, 2026Updated 4 months ago
Alternatives and similar repositories for andi
Users that are interested in andi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated last year
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated 2 weeks ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated last week
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Jun 1, 2026Updated 3 weeks ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 9 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- Remove human reads from a sequencing run☆48Jun 22, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆38Apr 14, 2022Updated 4 years ago
- Split Kmer Analysis☆66May 26, 2022Updated 4 years ago
- Pairwise whole genome aligner☆240Jun 18, 2026Updated last week
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆46Feb 17, 2021Updated 5 years ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Variant call verification☆17May 12, 2025Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆132Apr 17, 2026Updated 2 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Jun 9, 2026Updated 3 weeks ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Reorients assembled microbial sequences☆140Updated this week
- Randomly subsample sequencing reads or alignments☆268Jun 22, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 11 months ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆16Jun 19, 2026Updated last week
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 8 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago