♥ Efficient Estimation of Evolutionary Distances
☆47Feb 15, 2026Updated 5 months ago
Alternatives and similar repositories for andi
Users that are interested in andi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads☆11Dec 27, 2016Updated 9 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated last year
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated last month
- ☆53May 11, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Jul 2, 2026Updated 2 weeks ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆29Jun 1, 2017Updated 9 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated 3 weeks ago
- ☆38Apr 14, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Remove human reads from a sequencing run☆49Jun 29, 2026Updated 3 weeks ago
- Pairwise whole genome aligner☆242Updated this week
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last week
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Visualization tool for (meta)genome assembly graphs☆49Jul 10, 2026Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Jun 9, 2026Updated last month
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- High throughput sequencing analysis tools☆30Apr 21, 2025Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆46Jul 24, 2025Updated 11 months ago
- Variant call verification☆19May 12, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Randomly subsample sequencing reads or alignments☆271Updated this week
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 7 months ago