A universal enrichment tool for interpreting omics data
☆1,199Apr 26, 2026Updated this week
Alternatives and similar repositories for clusterProfiler
Users that are interested in clusterProfiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualization of Functional Enrichment Result☆258Updated this week
- ChIP peak Annotation, Comparison and Visualization☆253Nov 4, 2025Updated 5 months ago
- Make Complex Heatmaps☆1,489Apr 2, 2026Updated 3 weeks ago
- Visualization and annotation of phylogenetic trees☆927Apr 9, 2026Updated 3 weeks ago
- Gene set variation analysis☆240Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R toolkit for single cell genomics☆2,715Apr 22, 2026Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆778Jan 6, 2024Updated 2 years ago
- Disease Ontology Semantic and Enrichment analysis☆125Updated this week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆642Apr 21, 2026Updated last week
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,718Apr 13, 2026Updated 2 weeks ago
- ☆447Apr 23, 2026Updated last week
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆482Apr 5, 2024Updated 2 years ago
- RNA-seq aligner☆2,188Mar 18, 2025Updated last year
- RNAseq analysis notes from Ming Tang☆1,082Nov 15, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,341Updated this week
- Publication-ready volcano plots with enhanced colouring and labeling☆462Dec 3, 2025Updated 4 months ago
- Inferring CNV from Single-Cell RNA-Seq☆663Nov 14, 2025Updated 5 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆545Mar 21, 2025Updated last year
- Circular visualization in R☆1,012Nov 11, 2023Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆472Mar 13, 2026Updated last month
- One-step to Cluster and Visualize Gene Expression Matrix☆368Mar 7, 2026Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆587Mar 4, 2026Updated last month
- ChIP-seq analysis notes from Ming Tang☆851Aug 5, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast Gene Set Enrichment Analysis☆440Jan 2, 2026Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆292Dec 16, 2025Updated 4 months ago
- R toolkit for the analysis of single-cell chromatin data☆414Apr 20, 2026Updated last week
- GUI/CommandLine Tool Box for biologistists to utilize NGS data.☆1,048Apr 5, 2026Updated 3 weeks ago
- Community-provided extensions to Seurat☆360Feb 17, 2026Updated 2 months ago
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 4 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆488Feb 25, 2026Updated 2 months ago
- An implement R package to visualize GSEA results☆222Dec 8, 2025Updated 4 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆328Apr 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MACS -- Model-based Analysis of ChIP-Seq☆774Apr 8, 2026Updated 3 weeks ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆538Apr 6, 2026Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆639Nov 12, 2025Updated 5 months ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,427Apr 23, 2026Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆450Feb 18, 2025Updated last year
- 'ggplot2' Based Publication Ready Plots☆1,242Feb 28, 2026Updated 2 months ago
- A tool for semi-automatic cell type classification☆473Mar 21, 2026Updated last month