Alternatives and similar repositories for clusterProfiler

Users that are interested in clusterProfiler are comparing it to the libraries listed below

• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,016Updated 3 years ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆676Updated 3 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆809Updated 11 months ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆434Updated 8 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆625Updated 5 months ago
• YinLiLin / CMplot
  📊 Circular and Rectangular Manhattan Plot
  ☆581Updated 3 months ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆401Updated last month
• hbctraining / DGE_workshop
  ☆394Updated 3 years ago
• hbctraining / Intro-to-scRNAseq
  ☆607Updated 2 months ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆816Updated 2 months ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆914Updated 2 years ago
• griffithlab / rnaseq_tutorial
  Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…
  ☆1,379Updated 2 years ago
• kpatel427 / YouTubeTutorials
  ☆336Updated 9 months ago
• hbctraining / scRNA-seq
  ☆571Updated 4 years ago
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆467Updated last week
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆497Updated last week
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆712Updated last week
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆335Updated last month
• nf-core / rnaseq
  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
  ☆1,060Updated last week
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆444Updated 5 years ago
• kevinblighe / EnhancedVolcano
  Publication-ready volcano plots with enhanced colouring and labeling
  ☆435Updated last year
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆522Updated last year
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆748Updated 3 months ago
• jmzeng1314 / GEO
  ☆838Updated 2 years ago
• sqjin / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆709Updated last year
• immunogenomics / harmony
  Fast, sensitive and accurate integration of single-cell data with Harmony
  ☆580Updated 8 months ago
• theislab / single-cell-tutorial
  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…
  ☆1,496Updated 2 years ago
• alserglab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆409Updated last week
• crazyhottommy / getting-started-with-genomics-tools-and-resources
  Unix, R and python tools for genomics and data science
  ☆1,288Updated 3 months ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆550Updated last week