Alternatives and similar repositories for fgsea

Users that are interested in fgsea are comparing it to the libraries listed below

• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆246Updated last month
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆394Updated 2 weeks ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆234Updated 2 months ago
• hbctraining / Intro-to-DGE
  ☆199Updated 3 months ago
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆466Updated last month
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆288Updated this week
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆336Updated this week
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago
• pachterlab / sleuth
  Differential analysis of RNA-Seq
  ☆304Updated 3 weeks ago
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆317Updated 2 weeks ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆416Updated last month
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated 2 weeks ago
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆341Updated 10 months ago
• kevinblighe / EnhancedVolcano
  Publication-ready volcano plots with enhanced colouring and labeling
  ☆433Updated last year
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆258Updated 3 months ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆334Updated 7 months ago
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆334Updated 3 weeks ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆495Updated last month
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆190Updated 2 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆307Updated 2 years ago
• hbctraining / DGE_workshop
  ☆392Updated 3 years ago
• MarioniLab / miloR
  R package implementation of Milo for testing for differential abundance in KNN graphs
  ☆381Updated 2 weeks ago
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆205Updated 11 months ago
• stuart-lab / signac
  R toolkit for the analysis of single-cell chromatin data
  ☆375Updated 5 months ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆280Updated 11 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆219Updated 2 months ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆163Updated this week
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆325Updated this week
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆413Updated 3 weeks ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆620Updated 4 months ago