alserglab / fgsea
Fast Gene Set Enrichment Analysis
☆391Updated 3 months ago
Alternatives and similar repositories for fgsea:
Users that are interested in fgsea are comparing it to the libraries listed below
- Visualization of Functional Enrichment Result☆240Updated last week
- ChIP peak Annotation, Comparison and Visualization☆234Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆270Updated 5 months ago
- ☆192Updated this week
- A toolkit for single-cell immune profiling☆328Updated this week
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆461Updated 4 months ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆119Updated 4 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆380Updated 2 weeks ago
- ☆386Updated 3 years ago
- Gene set variation analysis☆212Updated this week
- Materials for short, half-day workshops☆324Updated this week
- High dimensional weighted gene co-expression network analysis☆385Updated last week
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆307Updated last year
- Table of software for the analysis of single-cell RNA-seq data.☆316Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆408Updated 2 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆481Updated last month
- R package to infer biological activities from omics data using a collection of methods.☆231Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆521Updated 3 weeks ago
- Community-provided extensions to Seurat☆324Updated 3 months ago
- RNA-seq workflow using STAR and DESeq2☆339Updated 7 months ago
- A simple gene co-expression analyses workflow powered by tidyverse and graph analyses☆197Updated 8 months ago
- Interactively analyze single cell genomic data☆182Updated last month
- Publication-ready volcano plots with enhanced colouring and labeling☆424Updated 9 months ago
- R data package for annotating/converting Gene IDs☆163Updated 2 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆190Updated last year
- Analyzing and visualizing KEGG information using the grammar of graphics☆225Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆184Updated last month
- Application for making ENCODE Blacklists☆294Updated 3 years ago
- Intro to ChIPseq using HPC☆300Updated 2 years ago
- Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…☆107Updated this week