alserglab / fgseaView external linksLinks
Fast Gene Set Enrichment Analysis
☆433Jan 2, 2026Updated last month
Alternatives and similar repositories for fgsea
Users that are interested in fgsea are comparing it to the libraries listed below
Sorting:
- Gene set variation analysis☆231Dec 14, 2025Updated 2 months ago
- Visualization of Functional Enrichment Result☆256Jan 18, 2026Updated 3 weeks ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆289Jun 17, 2025Updated 7 months ago
- Publication-ready volcano plots with enhanced colouring and labeling☆450Dec 3, 2025Updated 2 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated 9 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆309Updated this week
- Multi-sample multi-group scRNA-seq analysis tools☆217Dec 18, 2025Updated last month
- Simplify functional enrichment results☆124Jan 30, 2026Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆425Feb 4, 2026Updated last week
- R package to infer biological activities from omics data using a collection of methods.☆285Dec 16, 2025Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆414Sep 4, 2025Updated 5 months ago
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- pathfindR: Enrichment Analysis Utilizing Active Subnetworks☆196Dec 22, 2025Updated last month
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆520Jan 5, 2026Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆311Nov 1, 2022Updated 3 years ago
- ☆438Jan 8, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆230Dec 15, 2025Updated last month
- Make Complex Heatmaps☆1,465Jan 30, 2026Updated 2 weeks ago
- A universal enrichment tool for interpreting omics data☆1,168Feb 8, 2026Updated last week
- Tools and methods for analysis of single cell assay data in R☆260Oct 17, 2025Updated 3 months ago
- High dimensional weighted gene co-expression network analysis☆465Jan 7, 2026Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆218Feb 26, 2024Updated last year
- Interpretation of cell states using reference single-cell maps☆309Dec 19, 2025Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆523Mar 21, 2025Updated 10 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆248Jan 10, 2026Updated last month
- Easy single cell analysis platform for enrichment☆211Jan 4, 2026Updated last month
- Draw heatmap simply using a tidy data frame☆357Feb 7, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆288Jan 29, 2026Updated 2 weeks ago
- Interactively analyze single cell genomic data☆184Jan 14, 2026Updated last month
- MSigDB gene sets for multiple organisms in a tidy data format☆84Jul 22, 2025Updated 6 months ago
- Conversion between scRNA-seq objects☆198Jan 12, 2026Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆199Jan 5, 2026Updated last month
- R data package for annotating/converting Gene IDs☆169Jul 6, 2025Updated 7 months ago
- A tool to find sequencing data and metadata from public databases.☆593Aug 13, 2024Updated last year
- Community-provided extensions to Seurat☆355Jan 30, 2026Updated 2 weeks ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆484Jan 27, 2026Updated 2 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆114Jan 30, 2023Updated 3 years ago