alserglab / fgseaLinks
Fast Gene Set Enrichment Analysis
☆401Updated 2 weeks ago
Alternatives and similar repositories for fgsea
Users that are interested in fgsea are comparing it to the libraries listed below
Sorting:
- Visualization of Functional Enrichment Result☆243Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆287Updated 3 weeks ago
- ChIP peak Annotation, Comparison and Visualization☆234Updated last month
- Differential expression of RNA-seq data using the Negative Binomial☆390Updated last week
- ☆197Updated 2 months ago
- A toolkit for single-cell immune profiling☆333Updated this week
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆463Updated last month
- Materials for short, half-day workshops☆329Updated this week
- Clone of the Bioconductor repository for the SingleR package.☆191Updated last week
- Community-provided extensions to Seurat☆333Updated 6 months ago
- R package for integrating and analyzing multiple single-cell datasets☆413Updated 3 weeks ago
- Gene set variation analysis☆217Updated last month
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- Publication-ready volcano plots with enhanced colouring and labeling☆430Updated 11 months ago
- 🧬 immunarch [R package] – Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires☆320Updated last year
- karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome☆314Updated last week
- R package for DNA methylation analysis☆231Updated 3 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆488Updated 3 weeks ago
- A simple gene co-expression analyses workflow powered by tidyverse and graph analyses☆202Updated 10 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆263Updated 4 months ago
- R package to infer biological activities from omics data using a collection of methods.☆255Updated 2 months ago
- Intro to ChIPseq using HPC☆307Updated 2 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆224Updated last month
- Multi-Omics Factor Analysis☆244Updated 4 years ago
- Interpretation of cell states using reference single-cell maps☆276Updated last week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆324Updated this week
- ☆392Updated 3 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆170Updated 4 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆297Updated 4 years ago