VAginaL community state typE Nearest CentroId clAssifier
☆23Apr 18, 2023Updated 2 years ago
Alternatives and similar repositories for VALENCIA
Users that are interested in VALENCIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated last week
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆17Jun 21, 2024Updated last year
- ☆15Sep 15, 2022Updated 3 years ago
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- Find Co-Abundant Groups of Genes☆11Aug 3, 2020Updated 5 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated 11 months ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ☆15Mar 10, 2026Updated 2 weeks ago
- ☆36Dec 22, 2025Updated 3 months ago
- ☆12Oct 3, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- selbal: selection of balances for microbial signatures☆32Feb 24, 2025Updated last year
- ☆15Oct 7, 2025Updated 5 months ago
- ☆17Nov 19, 2024Updated last year
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 4 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated 11 months ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆36Sep 23, 2020Updated 5 years ago
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆170Jan 2, 2026Updated 2 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Jan 21, 2022Updated 4 years ago
- ☆36Nov 11, 2022Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Protein Alignment and Detection Interface☆60Apr 1, 2024Updated last year
- ☆26Feb 23, 2026Updated last month
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- R package for downstream Microbiome analysis☆30Dec 10, 2024Updated last year
- A comprehensive pipeline for short read metagenomic data☆25Aug 25, 2020Updated 5 years ago