ravel-lab / VALENCIALinks
VAginaL community state typE Nearest CentroId clAssifier
☆22Updated 2 years ago
Alternatives and similar repositories for VALENCIA
Users that are interested in VALENCIA are comparing it to the libraries listed below
Sorting:
- Functions to manipulate and visualize microbial community data☆12Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Updated 6 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 4 months ago
- Working with the outputs of sourmash in R☆28Updated 2 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- ☆10Updated last week
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Tools for analyzing trees☆13Updated 8 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Simple R utilities for working with HMMER☆19Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- ☆28Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- R package for microbial pangenomics☆24Updated 3 years ago
- De novo VIral Genome Annotator☆23Updated last year
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Processing support for Greengenes2☆14Updated 2 years ago
- Pan-genome Analysis☆12Updated 7 months ago
- ☆22Updated 2 years ago