lasy / altoLinks
'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and provides visualization functions to explore the alignment and robustness of topics across environments or LDA hyper-parameters.
☆17Updated last year
Alternatives and similar repositories for alto
Users that are interested in alto are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- Linear Decomposition Model☆25Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- ☆17Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- ☆14Updated 2 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Updated 11 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- Processing support for Greengenes2☆14Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated 3 weeks ago
- ☆26Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ☆14Updated 3 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Updated 2 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- A modest re-desing update for the classic FastQC report.☆29Updated 5 months ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆20Updated 3 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 3 years ago
- ☆39Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 3 years ago
- Omics data analysis☆15Updated last month
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 6 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 6 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated 2 months ago