'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and provides visualization functions to explore the alignment and robustness of topics across environments or LDA hyper-parameters.
☆18May 13, 2026Updated 5 months ago
Alternatives and similar repositories for alto
Users that are interested in alto are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome Data Simulator☆11Jul 11, 2025Updated last year
- VAginaL community state typE Nearest CentroId clAssifier☆25Apr 18, 2023Updated 3 years ago
- Repository for Discussions and Materials about The Carpentries Workbench☆20Oct 27, 2026Updated last week
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Dec 30, 2019Updated 6 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆18Jul 15, 2025Updated last year
- ☆14Dec 2, 2024Updated last year
- ☆10Mar 24, 2025Updated last year
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Compositional Lotka-Volterra☆16May 31, 2024Updated 2 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 3 years ago
- R code implementing QTL mapping of physiological, behavioral and gene expression phenotypes in Carworth Farms White (CFW) outbred mice.☆10Aug 24, 2017Updated 9 years ago
- ☆15May 1, 2024Updated 2 years ago
- ☆12May 11, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 6 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆11Sep 17, 2020Updated 6 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ☆15Sep 15, 2022Updated 4 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 4 years ago
- A manually curated database of human gut metabolic modules.☆19Oct 26, 2026Updated last week
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆23Oct 9, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 7 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Genomic Islands From Roary Pangenomes☆10Jul 16, 2021Updated 5 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆16Dec 2, 2022Updated 3 years ago
- Code Club project analyzing utility of ASVs☆10Jul 12, 2021Updated 5 years ago
- ☆13Jun 23, 2021Updated 5 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆12Nov 10, 2023Updated 2 years ago
- A series of generic SAS® macros to carry out streamlined routine data analyses with reports for observational studies☆12Dec 11, 2018Updated 7 years ago
- Interpretability methods to analyze the behavior and individual predictions of modern neural networks in R.☆31Feb 22, 2026Updated 8 months ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- Time-Course Multi-Omics data integration☆26Apr 9, 2024Updated 2 years ago
- ☆16Feb 12, 2026Updated 8 months ago
- Latent Dirichlet allocation package for R☆16Jul 26, 2018Updated 8 years ago