lasy / altoLinks
'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and provides visualization functions to explore the alignment and robustness of topics across environments or LDA hyper-parameters.
☆17Updated last year
Alternatives and similar repositories for alto
Users that are interested in alto are comparing it to the libraries listed below
Sorting:
- ☆13Updated 2 years ago
- ☆17Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 7 months ago
- Linear Decomposition Model☆25Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- ☆28Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated last month
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- ☆26Updated 2 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 5 months ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Updated 9 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- ☆12Updated 8 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Updated 2 years ago
- ☆29Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Fit LOg-RAtio Lasso regression for compositional covariates☆14Updated last week
- ☆14Updated 3 years ago
- ☆19Updated 2 years ago
- Processing support for Greengenes2☆14Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- Omics data analysis☆15Updated last month
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 6 years ago
- ☆20Updated last month
- tidyMicro GitHup Repository☆21Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate☆28Updated 5 months ago