lasy / altoLinks
'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and provides visualization functions to explore the alignment and robustness of topics across environments or LDA hyper-parameters.
☆17Updated last year
Alternatives and similar repositories for alto
Users that are interested in alto are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- ☆13Updated 2 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated 2 months ago
- ☆26Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- tidyMicro GitHup Repository☆21Updated 4 years ago
- ☆28Updated last year
- Linear Decomposition Model☆25Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Updated 10 months ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Updated 3 years ago
- Processing support for Greengenes2☆14Updated 2 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Updated 2 years ago
- ☆20Updated 3 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated 2 weeks ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 3 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data☆20Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- A modest re-desing update for the classic FastQC report.☆29Updated 5 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- ☆12Updated 8 years ago
- VAginaL community state typE Nearest CentroId clAssifier☆23Updated 2 years ago
- Exploration of Omics data☆25Updated 5 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate☆28Updated last week