DenefLab / MicrobeMiseqLinks
Set of useful functions and scripts for analyzing amplicon Miseq data.
☆18Updated 9 years ago
Alternatives and similar repositories for MicrobeMiseq
Users that are interested in MicrobeMiseq are comparing it to the libraries listed below
Sorting:
- functions for analyzing phyloseq data☆28Updated 10 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- ☆79Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated 11 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- ☆23Updated 7 years ago
- ☆41Updated 8 years ago
- Basic Sequence Taxonomy Annotator☆44Updated last year
- Convert QIIME files into Oligotyping subsets.☆15Updated 11 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Updated 2 weeks ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 2 years ago
- Metagenomics Workshop☆28Updated 9 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated 3 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated 3 weeks ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- SourceTracker2☆81Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago