Protein Alignment and Detection Interface
☆61Apr 1, 2024Updated 2 years ago
Alternatives and similar repositories for paladin
Users that are interested in paladin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆69Aug 12, 2019Updated 7 years ago
- ☆23Apr 3, 2023Updated 3 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 9 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 9 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- sensitive and precise assembly of short sequencing reads☆171Oct 11, 2024Updated 2 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 8 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆27Aug 20, 2026Updated 2 months ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆37Oct 17, 2018Updated 8 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 9 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 3 years ago
- Find Unique genomic Regions☆34Sep 29, 2026Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 3 years ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 4 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- ☆16Jan 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 7 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- SHallow shOtGUN profiler☆51Mar 4, 2022Updated 4 years ago
- A tool to circularize genome assemblies☆258Apr 6, 2024Updated 2 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆113Jun 19, 2026Updated 4 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆28Mar 25, 2023Updated 3 years ago
- A user-friendly workflow for phylogenomics☆235Sep 28, 2026Updated last month
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆69Oct 23, 2026Updated last week
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 9 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year