Protein Alignment and Detection Interface
☆60Apr 1, 2024Updated 2 years ago
Alternatives and similar repositories for paladin
Users that are interested in paladin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆68Aug 12, 2019Updated 6 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- ☆22Apr 3, 2023Updated 3 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 9 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated last week
- Histosketching Using Little Kmers☆57May 25, 2023Updated 3 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Oct 17, 2018Updated 7 years ago
- BiG-MEx implementation as Docker images and R packages☆13Feb 9, 2022Updated 4 years ago
- sensitive and precise assembly of short sequencing reads☆167Oct 11, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 8 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- SHallow shOtGUN profiler☆52Mar 4, 2022Updated 4 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Updated this week
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆16Jan 21, 2024Updated 2 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆26Mar 25, 2023Updated 3 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 6 months ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 5 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- ☆14Oct 14, 2020Updated 5 years ago