SWittouck / tidyamplicons
Functions to manipulate and visualize microbial community data
☆11Updated last year
Alternatives and similar repositories for tidyamplicons:
Users that are interested in tidyamplicons are comparing it to the libraries listed below
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 6 months ago
- Dadaist2 🟨 Highway to R☆13Updated this week
- A functional profiler for metagenomes using FracMinHash☆14Updated last month
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 5 months ago
- R package for microbial pangenomics☆21Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- ☆15Updated last year
- ☆25Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Plot microbiome time series in parallel☆24Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- Metagenomic Estimation of Dietary Intake and Content.☆15Updated this week
- Interpretative standards for AMR genotypes☆14Updated 6 months ago
- Prediction of microbial interactions in complex communities☆12Updated 5 months ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 8 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆12Updated last year
- ☆22Updated last year
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 6 months ago
- Download assembly files from NCBI☆11Updated last year
- scripts for microbiome analysis☆11Updated 5 months ago
- ☆11Updated last year
- Tools for analyzing trees☆14Updated last year
- ☆13Updated 7 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Calculate assocations between genes and traits☆20Updated 2 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Working with the outputs of sourmash in R☆26Updated last year