Functions to manipulate and visualize microbial community data
☆12Sep 15, 2023Updated 2 years ago
Alternatives and similar repositories for tidyamplicons
Users that are interested in tidyamplicons are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Functions to manipulate and visualize microbial community data☆13Mar 11, 2026Updated 2 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Feb 23, 2026Updated last month
- VAginaL community state typE Nearest CentroId clAssifier☆23Apr 18, 2023Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Find Co-Abundant Groups of Genes☆11Aug 3, 2020Updated 5 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 8 months ago
- ☆15Sep 15, 2022Updated 3 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Markov random fields with covariates☆24Mar 27, 2024Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Mar 15, 2026Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆161Apr 23, 2025Updated 11 months ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Dec 23, 2025Updated 3 months ago
- SHallow shOtGUN profiler☆52Mar 4, 2022Updated 4 years ago
- Miscellaneous scripts☆24Sep 7, 2016Updated 9 years ago
- Questions asked in PhD defences☆10Apr 30, 2024Updated last year
- QGIS svg icons - Animal silhouettes☆12Nov 17, 2018Updated 7 years ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 5 months ago
- MAG Circularization Method☆32Nov 4, 2025Updated 4 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated last year
- GraftM - Rapid community profiles from metagenomes☆50Nov 6, 2025Updated 4 months ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated 2 weeks ago
- Detection of NCLDV signatures in 'omic data☆35Dec 28, 2025Updated 2 months ago
- Phylocom R interface☆15Apr 21, 2023Updated 2 years ago
- A repository for my work on rCRUX☆12Jun 21, 2024Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Aug 13, 2024Updated last year