MetaSUB / CAP2
☆13Updated last year
Alternatives and similar repositories for CAP2:
Users that are interested in CAP2 are comparing it to the libraries listed below
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago
- MicrobeDirectory 2.0☆22Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- ☆23Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 4 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆54Updated 5 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Gene-flank analysis tool☆27Updated 2 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 months ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Automatic Assembly For The Fungi☆20Updated 3 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Implementation of CoNet in R☆15Updated 5 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆14Updated last year