MetaSUB / CAP2
☆13Updated last year
Alternatives and similar repositories for CAP2:
Users that are interested in CAP2 are comparing it to the libraries listed below
- A comprehensive pipeline for short read metagenomic data☆24Updated 4 years ago
- MicrobeDirectory 2.0☆22Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆56Updated 7 months ago
- ☆23Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 4 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated 10 months ago
- Improvement of metagenome-assembled genomes☆51Updated 5 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆15Updated 2 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated last week
- ☆20Updated 8 years ago