☆12Oct 3, 2023Updated 2 years ago
Alternatives and similar repositories for CAP2
Users that are interested in CAP2 are comparing it to the libraries listed below
Sorting:
- A comprehensive pipeline for short read metagenomic data☆24Aug 25, 2020Updated 5 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- PanGenomePipeline☆16Apr 10, 2024Updated last year
- VAginaL community state typE Nearest CentroId clAssifier☆23Apr 18, 2023Updated 2 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- A continually expanding collection of microbiome analysis tools☆18Feb 24, 2022Updated 4 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Biology 202 Course Website☆18Oct 1, 2020Updated 5 years ago
- tutorials for 2015 EDAMAME☆24Aug 9, 2017Updated 8 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Sep 23, 2022Updated 3 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Feb 8, 2022Updated 4 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- Materials and presentation for the 2022 ISB Microbiome course.☆27Jun 13, 2024Updated last year
- Repo for Proksee Cmd Line Tools☆26Feb 22, 2023Updated 3 years ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Nov 9, 2025Updated 3 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆11Aug 9, 2021Updated 4 years ago
- Web-based software for visualization of molecular maps in 2D and 3D☆27Jul 31, 2023Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Aug 24, 2022Updated 3 years ago
- Automatic RNA-Seq Pipelines with Interactive Report☆25Jun 1, 2025Updated 8 months ago
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- MAG Circularization Method☆32Nov 4, 2025Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Jun 13, 2023Updated 2 years ago
- This is the website for the Language Technology and Data Analysis Laboratory (LADAL) which is part of the School of Languages and Culture…☆14Jan 29, 2025Updated last year
- Web app for Malaria detection from the human blood sample images which is trained on National Library of Medicine dataset using Flask and…☆13Oct 3, 2023Updated 2 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- Code for nanopore paper☆33Jun 26, 2015Updated 10 years ago
- Real time data analysis tools for the minION sequencing platform.☆30Apr 12, 2022Updated 3 years ago
- Lesson plans for teaching the basics of HTML, CSS, SVG, JSON, and JS (primarily D3.js), in order to create browser-based data visualisati…☆34Aug 26, 2016Updated 9 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆47Feb 16, 2026Updated last week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Dec 3, 2025Updated 2 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- Curso intensivo de Python dictado para personas interesadas en trabajar en las areas de Data Analytics y Data Science☆10Nov 12, 2017Updated 8 years ago
- Workshop 10 - Advanced multivariate analyses☆11Sep 3, 2024Updated last year