hzaurzli / MicroWorldOmics
☆14Updated last month
Alternatives and similar repositories for MicroWorldOmics:
Users that are interested in MicroWorldOmics are comparing it to the libraries listed below
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 5 months ago
- ☆13Updated 2 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 weeks ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 9 months ago
- Metagenome analysis using the Kraken software suite☆30Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 10 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated 10 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 6 years ago
- ☆22Updated 5 years ago
- TF-DNA-binding assay analysis pipeline☆12Updated 4 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆33Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆23Updated last year
- ☆16Updated 10 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Qiime2 snakemake pipeline☆17Updated last year
- Automatically design multiplex PCR primer pairs for diverse templates☆23Updated 8 months ago
- ☆15Updated 3 weeks ago
- ☆26Updated 4 years ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 2 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆24Updated last year
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆26Updated 11 months ago