A comprehensive pipeline for short read metagenomic data
☆25Aug 25, 2020Updated 5 years ago
Alternatives and similar repositories for MetaSUB_CAP
Users that are interested in MetaSUB_CAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Oct 3, 2023Updated 2 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- Sequencing and analysis of crAssphage regions from around the globe☆19Apr 7, 2020Updated 6 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆35Apr 4, 2025Updated last year
- PanGenomePipeline☆16Apr 10, 2024Updated 2 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆27Jan 30, 2025Updated last year
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 4 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 8 months ago
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Aligner for sequencing data☆21Apr 20, 2026Updated 3 months ago
- Metagenomic classifier for CUDA-enabled GPUs☆17Jun 12, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated 3 weeks ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- A robust, extensible metagenomics pipeline☆177Jul 13, 2026Updated last week
- A Gene Finder framework for Julia.☆15Jan 16, 2026Updated 6 months ago
- Collection of commonly used RDP Tools for easy building☆52Jun 8, 2023Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆23May 16, 2020Updated 6 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- A tool to easily create informative genomic feature plots☆17Dec 26, 2022Updated 3 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Auto-parameterizing QC Pipeline for Illumina sequencing runs