malucalle / selbalLinks
selbal: selection of balances for microbial signatures
☆31Updated 4 months ago
Alternatives and similar repositories for selbal
Users that are interested in selbal are comparing it to the libraries listed below
Sorting:
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- ☆20Updated 5 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 2 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- SHallow shOtGUN profiler☆54Updated 3 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 7 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- ☆41Updated 7 years ago
- Plot microbiome time series in parallel☆26Updated last year
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆17Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Updated last year
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- ☆27Updated last year
- A microbiome analysis toolkit for R☆24Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test☆12Updated 6 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- ☆23Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆35Updated 2 years ago