statdivlab's teaching materials for STAMPS @ the MBL in 2019
☆11Jul 28, 2019Updated 6 years ago
Alternatives and similar repositories for stamps2019
Users that are interested in stamps2019 are comparing it to the libraries listed below
Sorting:
- ☆20Jun 8, 2020Updated 5 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Nov 8, 2019Updated 6 years ago
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 2 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- ☆12Oct 3, 2023Updated 2 years ago
- ☆11Jun 18, 2024Updated last year
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 4 months ago
- ☆24May 6, 2020Updated 5 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated 11 months ago
- STAMPS 2018 course☆15Aug 8, 2018Updated 7 years ago
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆17Jun 21, 2024Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Jan 24, 2024Updated 2 years ago
- Transform files to the microtable object with microeco package☆28Feb 13, 2026Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- ☆19Mar 8, 2026Updated 2 weeks ago
- Talk to the NCBI EUtils☆23Oct 8, 2020Updated 5 years ago
- Maximum Likelihood Amplicon Pipeline☆22May 22, 2024Updated last year
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- A Toolkit for Calculating and Working with Propensity Scores☆23Mar 2, 2026Updated 2 weeks ago
- Linear Decomposition Model☆25Jun 16, 2023Updated 2 years ago
- Supervised machine learning case studies with caret in R! 🌟 A free interactive course☆14May 14, 2020Updated 5 years ago
- VAginaL community state typE Nearest CentroId clAssifier☆23Apr 18, 2023Updated 2 years ago
- ☆28Feb 27, 2024Updated 2 years ago
- Miscellaneous functions for metagenomic analysis.☆53Feb 20, 2026Updated last month
- SDSC Summer Institute 2022 material☆14Aug 8, 2023Updated 2 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 6 years ago
- ☆11Oct 8, 2018Updated 7 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Oct 26, 2020Updated 5 years ago