statdivlab / stamps2019
statdivlab's teaching materials for STAMPS @ the MBL in 2019
☆12Updated 5 years ago
Alternatives and similar repositories for stamps2019:
Users that are interested in stamps2019 are comparing it to the libraries listed below
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Non parametric differential abundance tests for microbiome data☆9Updated 3 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 10 months ago
- ☆13Updated 5 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated last year
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- ☆19Updated last year
- STAMPS 2018 course☆16Updated 6 years ago
- functions for analyzing phyloseq data☆26Updated last month
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated 9 months ago
- Simple R utilities for working with HMMER☆18Updated 5 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆35Updated 9 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- Linear Decomposition Model☆24Updated last year
- tidyMicro GitHup Repository☆17Updated 3 years ago
- ☆26Updated last year
- 16S taxonomy assignment using an ecosystem-specific database.☆16Updated 2 years ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆9Updated 3 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Tools for analyzing trees☆14Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- ☆20Updated 4 years ago