xielab2017 / EasyMicroPlotLinks
R package for downstream Microbiome analysis
☆28Updated 6 months ago
Alternatives and similar repositories for EasyMicroPlot
Users that are interested in EasyMicroPlot are comparing it to the libraries listed below
Sorting:
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- A microbiome analysis toolkit for R☆23Updated last year
- ☆23Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆30Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆42Updated 2 weeks ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- ☆20Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Updated 2 years ago
- ☆41Updated 7 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- ☆11Updated 2 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- ☆15Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 8 months ago