xielab2017 / EasyMicroPlotLinks
R package for downstream Microbiome analysis
☆31Updated last year
Alternatives and similar repositories for EasyMicroPlot
Users that are interested in EasyMicroPlot are comparing it to the libraries listed below
Sorting:
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- ☆24Updated 5 years ago
- Transform files to the microtable object with microeco package☆28Updated 3 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- ☆42Updated 8 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated last week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- R implementation of the LEfSe method☆63Updated 2 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 6 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- ☆12Updated 4 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆57Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- ☆58Updated last year
- ☆15Updated last year
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- ☆15Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 8 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago