R package for downstream Microbiome analysis
☆31Dec 10, 2024Updated last year
Alternatives and similar repositories for EasyMicroPlot
Users that are interested in EasyMicroPlot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dissimilarity Overlap Curve analysis☆11Nov 14, 2022Updated 3 years ago
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Mar 25, 2026Updated 3 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- A comprehensive R package for deep mining microbiome☆195Apr 29, 2026Updated 2 months ago
- 📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models☆10Aug 24, 2021Updated 4 years ago
- ☆12Apr 5, 2021Updated 5 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆95Oct 1, 2025Updated 9 months ago
- ☆15May 7, 2022Updated 4 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- ☆23May 16, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Standalone shiny server container for viewing CellChat object☆14Feb 18, 2021Updated 5 years ago
- manage ordinations and render biplots in a tidyverse workflow☆27May 2, 2026Updated 2 months ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- ☆11Apr 17, 2025Updated last year
- Automatic RNA-Seq Pipelines with Interactive Report☆25Jun 1, 2025Updated last year
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆18Jan 4, 2026Updated 6 months ago
- An R package for downstream data analysis of microbiome omics data☆284Jul 11, 2026Updated last week
- This is a ggplot2 geom for plotting and comparing the ROC curves☆10Jul 6, 2016Updated 10 years ago
- ☆20Jun 8, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- Look Up Guild Information for Fungi in R☆25Mar 20, 2025Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆15Jul 2, 2019Updated 7 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆91Dec 27, 2024Updated last year
- ☆15Oct 7, 2025Updated 9 months ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆198Jun 30, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Neural networks for microbe-metabolite interaction analysis☆133Nov 4, 2022Updated 3 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆393Nov 27, 2025Updated 7 months ago
- A multi-country analysis of the short-term mortality risks of sulphur dioxide☆12Feb 13, 2025Updated last year
- microbiome R package☆318May 12, 2026Updated 2 months ago
- ☆14Nov 1, 2020Updated 5 years ago
- Documentation for Evolview☆29Nov 27, 2021Updated 4 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 5 years ago