niemasd / ViralConsensusLinks
Fast viral consensus genome reconstruction
β25Updated 5 months ago
Alternatives and similar repositories for ViralConsensus
Users that are interested in ViralConsensus are comparing it to the libraries listed below
Sorting:
- Mandrake πΏ/π¨βπ¬π¦ β Fast visualisation of the population structure of pathogens using Stochastic Cluster Embeddingβ39Updated 9 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineereβ¦β20Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.β59Updated 8 months ago
- Automated strain separation of low-complexity metagenomesβ53Updated 4 years ago
- Fast and space-efficient taxonomic classification of long readsβ43Updated 3 months ago
- Colinear block visualisation toolβ31Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.β59Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)β28Updated 4 months ago
- β24Updated 10 months ago
- A pipeline for bioinformatics analysis of bacterial genomesβ31Updated last week
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experimentβ20Updated 3 weeks ago
- Resolving Species Level Classification Using Emuβ14Updated last year
- Get microbial sequence data easier and fasterβ28Updated 6 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaβ40Updated 2 months ago
- Remove human reads from a sequencing runβ45Updated last week
- Intra-species bacterial contamination detectionβ25Updated 9 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogensβ33Updated 3 weeks ago
- Genome size estimation from long read overlapsβ74Updated last week
- CFSAN Shigella Typing Pipelineβ15Updated 2 years ago
- Recombination-free treesβ62Updated 3 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ42Updated 5 years ago
- Split Kmer Analysisβ65Updated 3 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.β26Updated 4 months ago
- Plasmid analysis using rearrangement distancesβ48Updated 3 months ago
- Detect contigs of complete circular genomesβ23Updated 6 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphsβ44Updated 3 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical dataβ48Updated last week
- Library of sketching functions used by PopPUNKβ31Updated 8 months ago
- Interactive, web tool for exploring pan-genome of bacterial strainsβ48Updated 3 years ago
- NCBI Pathogen Detection Portal toolkitβ11Updated 2 years ago