niemasd / ViralConsensusLinks
Fast viral consensus genome reconstruction
☆25Updated 6 months ago
Alternatives and similar repositories for ViralConsensus
Users that are interested in ViralConsensus are comparing it to the libraries listed below
Sorting:
- Fast and space-efficient taxonomic classification of long reads☆43Updated 4 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆36Updated last week
- Colinear block visualisation tool☆31Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 10 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆61Updated this week
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Plasmid analysis using rearrangement distances☆49Updated 4 months ago
- Remove human reads from a sequencing run☆47Updated last month
- Intra-species bacterial contamination detection☆25Updated 11 months ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 3 months ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆14Updated 11 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated last week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated last week
- Genome size estimation from long read overlaps☆80Updated last month
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 2 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated 2 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 8 months ago
- viralFlye pipeline☆18Updated last year
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 6 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year