Fast viral consensus genome reconstruction
☆27Feb 5, 2026Updated 3 months ago
Alternatives and similar repositories for ViralConsensus
Users that are interested in ViralConsensus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆13Mar 4, 2026Updated 2 months ago
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated 2 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated last month
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆72May 10, 2026Updated 2 weeks ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated 2 weeks ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆36Mar 27, 2024Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 5 years ago
- HIVdb webservice client☆12Jan 22, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 5 months ago
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆14May 18, 2026Updated last week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Mar 7, 2025Updated last year
- Influenza data pipeline to automate genotyping assignment☆42Mar 19, 2026Updated 2 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆142Apr 6, 2025Updated last year
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- Ultra-rapid detection of viral variants directly from sequencing data☆42Feb 17, 2026Updated 3 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆50Mar 23, 2026Updated 2 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Apr 2, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Apr 27, 2026Updated last month
- Plasmid analysis using rearrangement distances☆55May 13, 2026Updated 2 weeks ago
- Variant call verification☆17May 12, 2025Updated last year
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- Main development repository for SpreadGL☆22Sep 30, 2024Updated last year
- ☆30Mar 6, 2025Updated last year
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 8 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115May 22, 2026Updated last week
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 8 months ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 9 months ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆54Jul 24, 2025Updated 10 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- ☆38Apr 9, 2026Updated last month
- ☆22Dec 9, 2023Updated 2 years ago
- ☆11Apr 20, 2018Updated 8 years ago