steineggerlab / Metabuli-AppLinks
☆36Updated 3 months ago
Alternatives and similar repositories for Metabuli-App
Users that are interested in Metabuli-App are comparing it to the libraries listed below
Sorting:
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 7 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- ☆31Updated 10 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- UFCG: Universal Fungal Core Genes☆34Updated 3 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- ☆51Updated 5 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- A package to annotate protein sequences☆60Updated 8 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆91Updated 5 months ago
- ☆19Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆31Updated 4 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 8 months ago
- Influenza genome analysis Nextflow workflow☆30Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 11 months ago
- ☆42Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated last week
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated 10 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆58Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago