OSS-Lab / MetQyLinks
Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
☆18Updated 3 years ago
Alternatives and similar repositories for MetQy
Users that are interested in MetQy are comparing it to the libraries listed below
Sorting:
- Speedy versions of phyloseq functions☆48Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 2 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- selbal: selection of balances for microbial signatures☆31Updated 4 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- ☆27Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Tools for visualising microbial community amplicon data☆67Updated 2 months ago
- Simple R utilities for working with HMMER☆20Updated 9 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 4 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- ☆41Updated 7 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Non parametric differential abundance tests for microbiome data☆9Updated 4 years ago
- Plot microbiome time series in parallel☆26Updated last year
- functions for analyzing phyloseq data☆28Updated 5 months ago
- Implementation of CoNet in R☆16Updated 5 years ago