OSS-Lab / MetQy
Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
☆18Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for MetQy
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆34Updated 7 months ago
- Speedy versions of phyloseq functions☆46Updated 7 months ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆29Updated last year
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Simple R utilities for working with HMMER☆18Updated last month
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated last year
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- ☆23Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated last year
- ☆26Updated 8 months ago
- functions for analyzing phyloseq data☆26Updated 3 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 5 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆27Updated 10 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Phylogenetic Isometric Log Ratio☆19Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 7 months ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 11 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- A set of R scripts for the analysis of microbial profiles☆40Updated 6 months ago
- ☆38Updated 7 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆23Updated 3 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago