ablab / metaGTLinks
Pipeline for metagenome and metatranscriptome joint assembly
☆21Updated 2 years ago
Alternatives and similar repositories for metaGT
Users that are interested in metaGT are comparing it to the libraries listed below
Sorting:
- KEGG Module Evaluation Tool☆31Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Discover and annotate the virome☆49Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Calculate assocations between genes and traits☆25Updated 6 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- Bacterial GWAS analysis☆43Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- MAG Circularization Method☆32Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆36Updated 11 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 4 months ago
- ☆18Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- ☆26Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- ☆20Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year