Alternatives and similar repositories for metaGT:

Users that are interested in metaGT are comparing it to the libraries listed below

• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆21Updated last year
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated last year
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆22Updated 6 months ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆25Updated 3 months ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆32Updated 2 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆26Updated 2 months ago
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…
  ☆41Updated last month
• wanyuac / GeneMates
  An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
  ☆25Updated 2 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆22Updated 9 months ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 8 months ago
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated last week
• patrickwest / EukRep_Pipeline
  ☆24Updated 6 years ago
• wandreopoulos / deeplasmid
  ☆18Updated 4 months ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆17Updated last year
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆11Updated 3 years ago
• wbazant / CORRAL
  ☆11Updated last year
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆18Updated 10 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 2 years ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆31Updated last year
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆12Updated last month
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆31Updated 3 months ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆47Updated 6 months ago
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆26Updated last year
• lauriebelch / SOCfinder
  ☆16Updated last month
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆28Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆35Updated last month
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year