Alternatives and similar repositories for groves:

Users that are interested in groves are comparing it to the libraries listed below

• statdivlab / paramedic
  Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
  ☆14Updated 11 months ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated 9 months ago
• mdsufz / OrtSuite
  Prediction of microbial interactions in complex communities
  ☆12Updated 8 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• smangul1 / MiCoP
  MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
  ☆15Updated 3 years ago
• katcoyte / MK-SpikeSeq
  Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
  ☆13Updated 3 years ago
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• moritzbuck / mOTUlizer
  Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
  ☆15Updated 6 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 7 months ago
• quadram-institute-bioscience / dadaist2
  Dadaist2 🟨 Highway to R
  ☆13Updated last month
• thh32 / Protologger
  Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
  ☆14Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• FredHutch / nf-anvio-pangenome
  Analyze a set of genomes with the anvi'o pangenome pipeline
  ☆17Updated last year
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• alexmsalmeida / metamap
  Snakemake workflow to map and quantify microbial genomes in metagenomic reads
  ☆12Updated last year
• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆11Updated last year
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• larssnip / micropan
  R package for microbial pangenomics
  ☆23Updated 3 years ago
• lgpdevtools / sraX
  Systematic resistome analysis
  ☆10Updated 5 years ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆27Updated last year
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆23Updated 5 years ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆23Updated 9 months ago
• nf-core / pathogensurveillance
  Surveillance of pathogens using population genomics and sequencing
  ☆22Updated this week
• tseemann / berokka
  🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
  ☆26Updated 5 years ago
• aweimann / traitar
  ☆22Updated 2 years ago
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆16Updated 2 months ago
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆36Updated 6 months ago
• treangenlab / radmicrobes
  2025 RAD microbes boot camp
  ☆10Updated this week