statdivlab / groves
Tools for analyzing trees
☆14Updated 3 weeks ago
Alternatives and similar repositories for groves
Users that are interested in groves are comparing it to the libraries listed below
Sorting:
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Prediction of microbial interactions in complex communities☆12Updated 8 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- Dadaist2 🟨 Highway to R☆13Updated 2 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- De novo VIral Genome Annotator☆21Updated 8 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆22Updated 2 years ago
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 3 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 9 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Resolving Species Level Classification Using Emu☆12Updated 10 months ago
- Surveillance of pathogens using population genomics and sequencing☆23Updated this week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 5 months ago
- Automatic eukaryotic taxonomic classification☆28Updated this week