statdivlab / groves
Tools for analyzing trees
☆14Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for groves
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Updated 6 months ago
- Detect contigs of complete circular genomes☆21Updated 5 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- Prediction of microbial interactions in complex communities☆12Updated 3 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated 7 months ago
- ☆21Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 8 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- Functions to manipulate and visualize microbial community data☆11Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆12Updated 2 months ago
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 2 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 3 weeks ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆15Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆12Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Calculate assocations between genes and traits☆19Updated 3 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆21Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago