ravel-lab / VIRGOLinks
☆15Updated 3 years ago
Alternatives and similar repositories for VIRGO
Users that are interested in VIRGO are comparing it to the libraries listed below
Sorting:
- ☆22Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated 2 weeks ago
- A general metagenomics data mining system focus on robust microbiome research☆59Updated last year
- ☆81Updated 3 weeks ago
- Run_dbcan V5☆33Updated last month
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆50Updated last year
- ☆32Updated 11 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 7 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- gutSMASH☆55Updated 2 months ago
- ☆61Updated last year
- A program for detection of tRNA genes☆77Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- ☆39Updated 2 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆26Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- An R package designed for drawing gene arrow maps☆93Updated 2 months ago
- ☆21Updated 5 years ago
- A package to annotate protein sequences☆60Updated 9 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- ☆31Updated last year