aametwally / MetaLonDALinks
METAgenomic LONgitudinal Differential Abundance method
☆16Updated 5 years ago
Alternatives and similar repositories for MetaLonDA
Users that are interested in MetaLonDA are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆19Updated 2 weeks ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- ☆12Updated 7 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- ☆13Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- Microbiome research☆20Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆13Updated 8 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- ☆27Updated last year
- Linear Decomposition Model☆24Updated 2 years ago
- ☆13Updated 2 years ago
- ☆15Updated 7 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- A microbiome analysis toolkit for R☆23Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago