gavinmdouglas / picrust2_manuscriptLinks
☆24Updated 5 years ago
Alternatives and similar repositories for picrust2_manuscript
Users that are interested in picrust2_manuscript are comparing it to the libraries listed below
Sorting:
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 2 weeks ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 5 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆41Updated last year
- R package for downstream Microbiome analysis☆30Updated 11 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 4 months ago
- ☆57Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆39Updated last year
- ☆15Updated 2 years ago
- gutSMASH☆56Updated last month
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- selbal: selection of balances for microbial signatures☆32Updated 8 months ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- R implementation of the LEfSe method☆61Updated this week
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 5 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆47Updated this week
- ☆37Updated last year
- ☆20Updated 5 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆57Updated last year
- Transform files to the microtable object with microeco package☆28Updated 2 weeks ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- R shiny app for interactive microbiome analysis☆56Updated 5 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Metagenomics Workshop☆28Updated 8 years ago