csoneson / countsimQC
countsimQC - Compare characteristic features of count data sets
☆27Updated 3 weeks ago
Alternatives and similar repositories for countsimQC:
Users that are interested in countsimQC are comparing it to the libraries listed below
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- A tidy interface for coverage analysis☆24Updated 4 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Workshop for CNV analysis with Bioconductor☆17Updated last week
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated last month
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 3 weeks ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 10 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 3 years ago
- Gene-level general linear mixed model☆19Updated 3 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆20Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Glimma R package☆50Updated 4 months ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated last month
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆43Updated 2 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆26Updated last year
- ☆19Updated 7 years ago