csoneson / countsimQC
countsimQC - Compare characteristic features of count data sets
☆27Updated last month
Alternatives and similar repositories for countsimQC:
Users that are interested in countsimQC are comparing it to the libraries listed below
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- R package for benchmarking single cell analysis methods☆30Updated last year
- ☆19Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 7 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆21Updated last year
- Explore design matrices interactively with R/Shiny☆37Updated last month
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated 2 years ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Interactive benchmarking of ranking and assignment methods☆14Updated last month
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Independent Hypothesis Weighting☆15Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 3 weeks ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆19Updated 7 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 2 months ago