Fast, accurate taxonomic assignments for the human vaginal microbiota
☆11Mar 19, 2026Updated 7 months ago
Alternatives and similar repositories for speciateIT
Users that are interested in speciateIT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VAginaL community state typE Nearest CentroId clAssifier☆25Apr 18, 2023Updated 3 years ago
- Design capture probes☆10Apr 28, 2025Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 3 years ago
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated 2 years ago
- Taxon Set Enrichment Analysis☆12Oct 26, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆33Sep 8, 2026Updated last month
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- ☆16Aug 10, 2026Updated 2 months ago
- a Python library for generalized, low-level annotation of MS metabolomics☆14Oct 20, 2026Updated 2 weeks ago
- ☆15Sep 15, 2022Updated 4 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- A model-based visualization method for microbiome data☆16Jul 17, 2026Updated 3 months ago
- ☆16Jun 2, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Reproducible hybrid metagenomics with MAG recovery and strain-level resolution☆11Aug 20, 2026Updated 2 months ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- A Python package for microbiome sequencing analysis with QIIME 2☆46Jan 28, 2024Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- Ready-made Taxonomic Weights Repository☆25Mar 31, 2022Updated 4 years ago
- A manually curated database of human gut metabolic modules.☆19Oct 26, 2026Updated last week
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆25Sep 27, 2026Updated last month
- ☆26Apr 20, 2023Updated 3 years ago
- KBase distribution module for RASTtk.☆15Sep 14, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 8 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆29Mar 23, 2026Updated 7 months ago
- ODK-X Documentation, built in Sphinx.☆10May 9, 2024Updated 2 years ago
- MetaflowX: A Scalable and Resource-Efficient Workflow for Multi-Strategy Metagenomic Analysis☆43Feb 6, 2026Updated 9 months ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 3 years ago
- R package to partition R2 among predictors in Generalized linear mixed models☆23Sep 24, 2024Updated 2 years ago
- ☆14Jul 6, 2023Updated 3 years ago
- Open-source usearch☆143Sep 23, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 7 months ago
- ☆13Apr 11, 2022Updated 4 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 8 months ago
- Easily encrypt data in Django☆18Jan 28, 2025Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆28Updated this week
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Oct 5, 2026Updated last month
- A genome alignment and visualization system☆10Apr 30, 2024Updated 2 years ago