pixushi / temptedLinks
☆16Updated 10 months ago
Alternatives and similar repositories for tempted
Users that are interested in tempted are comparing it to the libraries listed below
Sorting:
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ☆16Updated 2 years ago
- ☆28Updated last year
- ☆16Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 5 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 2 months ago
- Compute strain abundance in a defined microbial community☆10Updated 2 years ago
- Processing support for Greengenes2☆13Updated 2 years ago
- ☆12Updated 7 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- Repository of the integrated mouse gut metagenomic catalog☆19Updated 3 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- De novo VIral Genome Annotator☆23Updated last year
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆16Updated last year
- A functional profiler for metagenomes using FracMinHash☆16Updated 2 months ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- ☆37Updated last year
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.☆23Updated 2 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year