☆18Oct 27, 2026Updated this week
Alternatives and similar repositories for tempted
Users that are interested in tempted are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- Goldfinder detects gene co-occurrence and avoidance accounting for phylogenetic relationships☆12Oct 15, 2026Updated 2 weeks ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Sep 29, 2026Updated last month
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 4 months ago
- Modeling strain-level variation by gene, phylogeny, or pathway☆14Aug 6, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- strain-level analysis tools☆41Oct 21, 2024Updated 2 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- ☆67Oct 12, 2026Updated 3 weeks ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Sep 18, 2026Updated last month
- ☆21Dec 15, 2020Updated 5 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Jaeger is a quick and precise tool for detecting viruses in sequence assemblies.☆10Oct 14, 2026Updated 2 weeks ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 8 months ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆93Jul 13, 2026Updated 3 months ago
- MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies☆13Jan 31, 2026Updated 9 months ago
- ggplots for nested data☆10Jul 17, 2024Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆27Aug 20, 2026Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Sep 1, 2026Updated 2 months ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆25Jun 9, 2021Updated 5 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Updated this week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆11Apr 22, 2021Updated 5 years ago
- ☆19Nov 7, 2025Updated 11 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 4 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆57Sep 28, 2026Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆38Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A pathway profiling tool designed for traversing metabolic pathway graphs, identifying most complete paths based on an evaluation set of …☆11Sep 10, 2026Updated last month
- Multi-omics multi-layered network integration and interpretation☆15Oct 15, 2024Updated 2 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆38Sep 23, 2020Updated 6 years ago
- 2025 RAD microbes boot camp☆17Apr 9, 2026Updated 6 months ago
- R package for visualising high-dimensional categorical data☆27Dec 11, 2025Updated 10 months ago
- ☆15Oct 14, 2023Updated 3 years ago
- Taxon Set Enrichment Analysis☆12Oct 26, 2026Updated last week