☆17Nov 19, 2024Updated last year
Alternatives and similar repositories for tempted
Users that are interested in tempted are comparing it to the libraries listed below
Sorting:
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆36Sep 23, 2020Updated 5 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- vaginal microbiota☆12Jan 21, 2025Updated last year
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- ☆12Jun 12, 2019Updated 6 years ago
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆10Apr 22, 2021Updated 4 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- ☆32Jun 12, 2023Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Metagenomic Estimation of Dietary Intake and Content.☆39Jan 29, 2026Updated last month
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Jan 31, 2026Updated last month
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- 2025 RAD microbes boot camp☆15Apr 30, 2025Updated 10 months ago
- ☆12Aug 3, 2025Updated 7 months ago
- ☆63Dec 16, 2025Updated 2 months ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated last year
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Nov 3, 2025Updated 4 months ago
- a comparative genome browser for bacteriophages☆20Jan 17, 2025Updated last year
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 4 years ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated 3 weeks ago
- ☆15Dec 8, 2022Updated 3 years ago
- ☆15Sep 15, 2022Updated 3 years ago
- ☆16Dec 26, 2022Updated 3 years ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Jan 5, 2026Updated 2 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆219Jan 27, 2025Updated last year
- ☆18Nov 7, 2025Updated 3 months ago
- ☆16May 22, 2023Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated 3 weeks ago