pixushi / tempted
☆10Updated this week
Related projects ⓘ
Alternatives and complementary repositories for tempted
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 7 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 8 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 9 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆25Updated 3 months ago
- ☆15Updated last year
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆14Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.☆20Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- A functional profiler for metagenomes using FracMinHash☆13Updated 2 months ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 6 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- ☆21Updated last year
- De novo VIral Genome Annotator☆21Updated 2 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 weeks ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆10Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated last month
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- strain-level analysis tools☆33Updated last month
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆21Updated 11 months ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated 6 months ago