PMBio / scMT-seq
☆14Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for scMT-seq
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆22Updated 6 years ago
- ☆19Updated 7 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆14Updated 4 years ago
- ☆16Updated 5 years ago
- CiteFuse:☆26Updated last year
- Mean Alterations Using Discrete Expression☆14Updated 7 months ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- GWAS gold standards repository☆29Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 3 years ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- ☆16Updated 3 years ago
- ☆14Updated last year
- Tutorial for the analysis of scRNA-seq data in R☆17Updated 6 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 6 months ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- Version 2.1.0 released☆23Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 3 years ago