☆15Nov 9, 2018Updated 7 years ago
Alternatives and similar repositories for scMT-seq
Users that are interested in scMT-seq are comparing it to the libraries listed below
Sorting:
- HiCtrans is a pipeline to call translocations from Hi-C data☆17Sep 27, 2021Updated 4 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Sep 30, 2018Updated 7 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 8 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Jun 11, 2021Updated 4 years ago
- Create QC and summary reports for Alevin output☆31Jan 27, 2026Updated last month
- Single cell network synthesis toolkit☆23Feb 15, 2021Updated 5 years ago
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- GrandPrix☆16May 27, 2019Updated 6 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated last year
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- ☆17Jul 29, 2021Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 4 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Nov 18, 2018Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)☆14Apr 3, 2024Updated last year
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated last month
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 3 years ago
- ☆27May 29, 2023Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- ☆16Jan 2, 2024Updated 2 years ago
- ☆13Jun 24, 2016Updated 9 years ago
- My presentation at RStudio::conf(2019), Austin, Tx - "The lazy and easily distracted report writer"☆17Feb 5, 2019Updated 7 years ago
- ☆86Jul 13, 2020Updated 5 years ago
- Documentation for the cellxgene product☆17Sep 13, 2022Updated 3 years ago
- Color Genomics Structural Variant Simulator☆11Sep 6, 2022Updated 3 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago