PMBio / scMT-seqLinks
☆15Updated 6 years ago
Alternatives and similar repositories for scMT-seq
Users that are interested in scMT-seq are comparing it to the libraries listed below
Sorting:
- ☆21Updated 8 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Updated 7 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆28Updated 8 years ago
- CiteFuse:☆28Updated 2 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆21Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- ☆10Updated 7 years ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago