csjansen / SOMatic
SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.
☆14Updated 5 months ago
Alternatives and similar repositories for SOMatic:
Users that are interested in SOMatic are comparing it to the libraries listed below
- Functions for single cell data analysis☆29Updated 3 years ago
- ☆33Updated 5 years ago
- meta-analysis of new and published human WAT single cell data☆12Updated last year
- ☆16Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆15Updated 8 months ago
- ☆31Updated 9 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 5 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Single-cell Case Control Analysis☆48Updated 3 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- ☆31Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- ☆18Updated 11 months ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- ☆20Updated 5 years ago
- ☆29Updated 2 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 3 months ago
- scWGCNA☆56Updated 2 years ago
- ☆45Updated 6 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago