AltschulerWu-Lab / scScopeLinks
☆49Updated 5 years ago
Alternatives and similar repositories for scScope
Users that are interested in scScope are comparing it to the libraries listed below
Sorting:
- ☆26Updated 8 months ago
- ☆100Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆43Updated 5 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆42Updated last year
- ☆45Updated 2 years ago
- ☆29Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆49Updated 10 months ago
- ☆11Updated 2 years ago
- ACTIONet single-cell analysis framework☆41Updated 8 months ago
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 6 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- Geometry-preserving random sampling☆82Updated 7 months ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆28Updated 5 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- ☆25Updated 3 years ago
- Population balance analysis☆44Updated 6 years ago
- Code for the MNN manuscript figures☆50Updated 6 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆47Updated 4 months ago
- Git Repo for simulating Boolean Models☆34Updated 11 months ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆91Updated 10 months ago