drisso / mbkmeansLinks
K-means clustering for large single-cell datasets
☆11Updated 3 years ago
Alternatives and similar repositories for mbkmeans
Users that are interested in mbkmeans are comparing it to the libraries listed below
Sorting:
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 3 years ago
- Code for performing PCA followed by CCA☆18Updated 6 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 3 weeks ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆11Updated 2 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- ☆18Updated 3 years ago
- ☆12Updated last year
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆12Updated last year
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Hierarchical Random Forest for Information Transfer☆13Updated 4 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- ☆21Updated 8 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 11 months ago
- This repository is retired software☆13Updated 9 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- ☆28Updated 2 years ago
- Add functional variant annotation to MAF file☆11Updated 10 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago