drisso / mbkmeansLinks
K-means clustering for large single-cell datasets
☆12Updated 3 years ago
Alternatives and similar repositories for mbkmeans
Users that are interested in mbkmeans are comparing it to the libraries listed below
Sorting:
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Updated 3 years ago
- Add functional variant annotation to MAF file☆11Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 months ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆12Updated 3 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- SeqOthello supports fast coverage query and containment query.☆12Updated 6 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- Code for performing PCA followed by CCA☆18Updated 7 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Telomerecat: The telomere computational analysis tool☆14Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- We have moved to https://github.com/limix/limix.☆23Updated 8 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 6 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 3 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 3 months ago
- Perturb-seq analysis package☆16Updated last year
- ☆12Updated 5 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Updated 3 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Updated 4 years ago
- ☆12Updated 2 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated last week
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆30Updated this week