K-means clustering for large single-cell datasets
☆13Feb 10, 2026Updated 8 months ago
Alternatives and similar repositories for mbkmeans
Users that are interested in mbkmeans are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- likelihood calculations over a tree to support ancient DNA Y chr analysis and more☆11Jul 4, 2023Updated 3 years ago
- Spatial Omics Structure Analysis (sosta)☆10Sep 18, 2026Updated last month
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- A package for comparing cell type abundances between conditions☆12Oct 14, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single Cell Proteomics Data☆13Oct 2, 2026Updated last month
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 8 years ago
- Wrapper for MUMPS Library☆10May 28, 2026Updated 5 months ago
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 3 weeks ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆24Apr 19, 2021Updated 5 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- An R interface to write OpenCL functions☆11Mar 15, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated last month
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 3 months ago
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- Empirical Bayes Deconvolution☆11Aug 23, 2026Updated 2 months ago
- R/Bioconductor package for optimized functional annotation of ChIP-seq data☆10May 15, 2019Updated 7 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆11Updated this week
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆11Mar 13, 2021Updated 5 years ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆13Dec 15, 2025Updated 10 months ago
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 3 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- MuData-compatible storage for bioconductor's MultiAssayExperiment☆11Updated this week
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆13Oct 1, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆24Oct 7, 2026Updated 3 weeks ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of l…☆12Oct 26, 2025Updated last year
- RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome☆41Sep 14, 2026Updated last month
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated last year