jingshuw / SAVERXView external linksLinks
R package for transfer learning of single-cell RNA-seq denoising
☆30Jun 14, 2022Updated 3 years ago
Alternatives and similar repositories for SAVERX
Users that are interested in SAVERX are comparing it to the libraries listed below
Sorting:
- ☆19Oct 27, 2021Updated 4 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Single-cell RNA-seq Gene Expression Recovery☆115Nov 28, 2024Updated last year
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated last year
- cTPnet Package☆27Jul 12, 2022Updated 3 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Nov 14, 2020Updated 5 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- ☆19Apr 8, 2025Updated 10 months ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- ☆43Jun 11, 2022Updated 3 years ago
- Scripts for data and figure generation in SAVER paper☆17Jan 5, 2021Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 4 years ago
- Epimap processing and analysis code repository☆34Aug 22, 2022Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Jul 15, 2015Updated 10 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- ☆18Sep 6, 2022Updated 3 years ago
- ☆101Mar 24, 2023Updated 2 years ago
- ☆48Jun 21, 2019Updated 6 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Dec 14, 2023Updated 2 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆19Jun 11, 2024Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 2 weeks ago
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 5 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆10Oct 6, 2017Updated 8 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- Bench-marking classification tools for scRNA-seq data☆194Jun 9, 2022Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Jul 30, 2022Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- Clone identification from single-cell data☆61Nov 10, 2022Updated 3 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 2 years ago