☆17Jun 6, 2022Updated 3 years ago
Alternatives and similar repositories for autoCell
Users that are interested in autoCell are comparing it to the libraries listed below
Sorting:
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆20Jun 21, 2024Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data☆17Jul 13, 2020Updated 5 years ago
- ☆18Sep 13, 2022Updated 3 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated last year
- ☆16May 10, 2023Updated 2 years ago
- ☆14Aug 13, 2023Updated 2 years ago
- Deep joint-leaning single-cell multi-omics model☆15Jun 27, 2022Updated 3 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 5 months ago
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- scGMAI: a Gaussian mixture model for clustering single-cell RNA-seq data based on deep autoencoder☆15Jun 7, 2021Updated 4 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated last year
- Single Cell Multi-omics deep clustering☆29Jul 1, 2025Updated 8 months ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆154Jul 25, 2024Updated last year
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated last year
- ☆27Mar 18, 2022Updated 4 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Feb 24, 2025Updated last year
- ☆34Apr 15, 2025Updated 11 months ago
- scDCC: Single Cell Deep Constrained Clustering☆43Jul 10, 2024Updated last year
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Mar 5, 2026Updated 2 weeks ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Nov 11, 2022Updated 3 years ago
- An interpretable deep learning model for cancer classification using high-dimensional omics data☆18Jan 24, 2022Updated 4 years ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆17Feb 5, 2023Updated 3 years ago
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆34Jul 10, 2024Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆40Jul 20, 2020Updated 5 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- ☆20May 30, 2022Updated 3 years ago
- ☆17Jul 8, 2024Updated last year
- Feature selection for preserving biological trajectories in single-cell data☆21May 29, 2025Updated 9 months ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- scWGCNA☆63Nov 8, 2022Updated 3 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- ☆63Aug 26, 2025Updated 6 months ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago