ChengF-Lab / autoCell
☆11Updated 2 years ago
Alternatives and similar repositories for autoCell:
Users that are interested in autoCell are comparing it to the libraries listed below
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆8Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 4 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆39Updated 4 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 4 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆17Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆22Updated last year
- cTPnet Package☆24Updated 2 years ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated 10 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆31Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- ☆15Updated 6 months ago
- ☆44Updated 8 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 3 months ago
- ☆54Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 3 months ago
- ☆16Updated 2 years ago
- ACTIONet single-cell analysis framework☆37Updated 4 months ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 5 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Python implementation of Gene Trajectory☆24Updated 4 months ago
- ☆11Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆75Updated last year
- ☆10Updated last year