laurenhsu1 / corralLinks
Dimensionality reduction and batch integration methods for single cell data
☆16Updated 2 years ago
Alternatives and similar repositories for corral
Users that are interested in corral are comparing it to the libraries listed below
Sorting:
- Single Cell multimodal data scripts for downloading datasets☆17Updated last month
- R package for benchmarking single cell analysis methods☆31Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- ☆62Updated 3 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated this week
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated 2 months ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Inference of switch-like differential expression along single-cell trajectories☆20Updated 7 years ago
- Workshop for CNV analysis with Bioconductor☆17Updated 6 months ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆28Updated 5 months ago
- Collection of useful methods for single cell analysis☆14Updated 10 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 weeks ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago