Dimensionality reduction and batch integration methods for single cell data
☆17Feb 9, 2023Updated 3 years ago
Alternatives and similar repositories for corral
Users that are interested in corral are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- ☆11Jan 29, 2025Updated last year
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 5 months ago
- Single-cell Hierarchical Poisson Factorization☆75Feb 14, 2026Updated 5 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bulk and single-cell Multi-Omics ground truth Simulator in R☆12Feb 10, 2026Updated 5 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆11Nov 10, 2023Updated 2 years ago
- Single Cell Consensus Clustering with Speed☆24Dec 12, 2022Updated 3 years ago
- ☆22Jan 16, 2026Updated 6 months ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆16Apr 29, 2024Updated 2 years ago
- Manubot for white paper☆13Sep 29, 2020Updated 5 years ago
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆22May 19, 2025Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆18Jun 4, 2019Updated 7 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- Volume-regularized NMF☆18Apr 14, 2022Updated 4 years ago
- ☆20Feb 27, 2013Updated 13 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 7 months ago
- ☆11Sep 7, 2023Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- Repository for the clone2vec python package☆24May 6, 2026Updated 2 months ago
- LoRA finetuned LLM for single cell genomics research☆30Jun 30, 2026Updated last month
- Cluster Evaluation R package (ClueR) for detecting key signaling events from time-series phosphoproteomics data☆11Jan 10, 2024Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Jun 12, 2019Updated 7 years ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 5 years ago
- ☆12Aug 8, 2024Updated last year
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- ☆12Sep 4, 2025Updated 10 months ago
- Multi-omics studies are available here☆53Jul 3, 2022Updated 4 years ago