laurenhsu1 / corral
Dimensionality reduction and batch integration methods for single cell data
☆16Updated 2 years ago
Alternatives and similar repositories for corral:
Users that are interested in corral are comparing it to the libraries listed below
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 weeks ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆20Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 weeks ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- Gene-level general linear mixed model☆21Updated 3 months ago
- ☆14Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 weeks ago
- ☆12Updated 11 months ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last week
- Toolbox package for organizing and working with TCGA data☆27Updated last week
- Clone of the Bioconductor repository for the scRNAseq package.☆25Updated 3 months ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- scRNA-Seq analysis vignettes☆9Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Code for EpiMap data browser☆14Updated 11 months ago
- ☆17Updated 11 months ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆20Updated 6 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago