Alternatives and similar repositories for SNN-Cliq

Users that are interested in SNN-Cliq are comparing it to the libraries listed below

• WangShuxiong / SoptSC
  SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …
  ☆22Updated 4 years ago
• yycunc / SAFEclustering
  SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆18Updated 4 years ago
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• txWang / BERMUDA
  BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
  ☆31Updated 5 years ago
• tarot0410 / BREMSC
  Novel joint clustering method with scRNA-seq and CITE-seq data
  ☆10Updated 4 years ago
• mohuangx / SAVER-paper
  Scripts for data and figure generation in SAVER paper
  ☆17Updated 4 years ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆27Updated 6 years ago
• PeterZZQ / scMoMaT
  ☆21Updated last year
• zhanglhbioinfor / DIRECT-NET
  ☆12Updated 2 years ago
• mukamel-lab / SingleCellFusion
  SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data
  ☆12Updated 3 years ago
• skinnider / SCT-MoA
  Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"
  ☆15Updated 6 years ago
• IlyaLab / gssnng
  Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
  ☆12Updated last year
• jianhuupenn / ItClust
  Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
  ☆55Updated 4 months ago
• wycwycpku / RSCORE
  ☆26Updated 4 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• PeterZZQ / CellPath
  ☆20Updated 3 years ago
• shibiaowan / SHARP
  SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection
  ☆17Updated 4 years ago
• wanwenzeng / coupleNMF
  ☆28Updated 5 years ago
• trungnt13 / sisua
  SemI-SUpervised generative Autoencoder models for single cell data
  ☆18Updated 4 years ago
• nicococo / scRNA
  Python framework for single-cell RNA-seq clustering with special focus on transfer learning.
  ☆18Updated 6 years ago
• camlab-bioml / cancersea
  a simple R data package for curated cancer pathway-specific gene lists
  ☆12Updated 5 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆36Updated 2 years ago
• hms-dbmi / crestree
  Neural Crest Fate Decisions
  ☆11Updated 6 years ago
• huBioinfo / CytoTalk
  A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…
  ☆19Updated 3 years ago
• mkarikom / RSoptSC
  Cell-cell communication and lineage inference for scRNA-seq data
  ☆24Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆37Updated last year
• mhu10 / scPanoView
  ☆11Updated 5 years ago
• debsin / dropClust
  Version 2.1.0 released
  ☆23Updated 6 years ago
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated 10 months ago