KlugerLab / ALRA-paper
☆9Updated 3 years ago
Alternatives and similar repositories for ALRA-paper:
Users that are interested in ALRA-paper are comparing it to the libraries listed below
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- CiteFuse:☆28Updated 2 years ago
- benchmark for single-cell RNA-seq imputation methods☆25Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- XEnograft Visualization & Analysis☆11Updated last month
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆13Updated 5 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆11Updated 2 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- ☆12Updated 5 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 3 months ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- scID☆13Updated 3 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline☆9Updated 5 years ago
- ☆16Updated 9 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Single Cell Consensus Clustering with Speed☆21Updated 2 years ago
- single cell Gene co-Expression Network Analysis☆9Updated 2 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ☆12Updated 4 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Fast motif matching in R☆47Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆11Updated this week