Alternatives and similar repositories for ALRA-paper

Users that are interested in ALRA-paper are comparing it to the libraries listed below

• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• Roy-lab / HiC-Reg
  HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals
  ☆11Updated 4 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• rpmccordlab / SMILE
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Updated 2 years ago
• MarieOestreich / hCoCena
  ☆16Updated 5 months ago
• dibbelab / singlecell_bcatlas
  Breast Cancer Single Cell Atlas
  ☆12Updated 3 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated last year
• LKremer / scbs
  Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…
  ☆11Updated last year
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆23Updated 3 years ago
• ma-compbio / CTCF-MP
  ☆12Updated 4 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 5 years ago
• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 3 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• chensong611 / SNARE_prep
  dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline
  ☆9Updated 5 years ago
• hemberg-lab / MicroExonator
  Snakemake pipeline for microexon discovery and quantification
  ☆20Updated 6 months ago
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆13Updated 7 years ago
• HelenaLC / simulation-comparison
  Snakemake workflow to benchmark scRNA-seq data simulators
  ☆13Updated 2 years ago
• cxzhu / Paired-seq
  Paired-seq
  ☆14Updated last year
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago