An accurate and efficient deep learning method for single-cell RNA-seq data imputation
☆89Jan 31, 2022Updated 4 years ago
Alternatives and similar repositories for deepimpute
Users that are interested in deepimpute are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- Deep count autoencoder for denoising scRNA-seq data☆271Mar 21, 2024Updated 2 years ago
- ☆18Jun 13, 2019Updated 6 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Accurate and robust imputation of scRNA-seq data☆99Aug 21, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generative adversarial networks for single-cell RNA-seq imputation☆39Jul 20, 2020Updated 5 years ago
- Imputing dropout events in single-cell RNA-sequencing data☆18Dec 7, 2020Updated 5 years ago
- AutoImpute : Autoencoder based imputation of single cell RNA-seq data☆28Aug 17, 2020Updated 5 years ago
- ☆22Nov 11, 2019Updated 6 years ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆20Jun 21, 2024Updated last year
- ☆47Jun 21, 2019Updated 6 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆381Oct 3, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Jul 21, 2019Updated 6 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Deep learning for single-cell transcript counts☆89Mar 14, 2025Updated last year
- Simple simulation of single-cell RNA sequencing data☆233Apr 16, 2026Updated 2 weeks ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Dec 29, 2019Updated 6 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Jun 5, 2019Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An actionable database of publicly available single-cell RNA-seq data☆41Apr 13, 2019Updated 7 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,613Updated this week
- ☆34Jun 12, 2019Updated 6 years ago
- Collection of public scRNA-Seq datasets used by our group☆171May 4, 2021Updated 4 years ago
- Deep Embedding for Single-cell Clustering☆89Apr 9, 2024Updated 2 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 5 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- covolutional neural network based coexpression analysis☆79Jun 13, 2020Updated 5 years ago
- ☆19Dec 1, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 7 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆32May 20, 2025Updated 11 months ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated last year
- Single cell perturbation prediction☆342Dec 5, 2024Updated last year
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 3 years ago