lanagarmire / deepimpute
An accurate and efficient deep learning method for single-cell RNA-seq data imputation
☆88Updated 3 years ago
Alternatives and similar repositories for deepimpute:
Users that are interested in deepimpute are comparing it to the libraries listed below
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆74Updated 4 months ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆91Updated 9 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆58Updated last year
- ☆26Updated 4 years ago
- ACTIONet single-cell analysis framework☆39Updated 7 months ago
- ☆49Updated 5 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- spatial transcriptome, single cell☆68Updated 2 years ago
- Tabula Muris Senis☆101Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆116Updated 8 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated last year
- R package to access DoRothEA's regulons☆144Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 7 months ago
- Accurate and robust imputation of scRNA-seq data☆95Updated 5 years ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆77Updated last month
- ☆47Updated last year
- CeSpGRN: Inferring cell specific GRN using single-cell gene expression data☆21Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 5 months ago
- covolutional neural network based coexpression analysis☆76Updated 4 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 4 years ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆52Updated 4 years ago