lanagarmire / deepimpute
An accurate and efficient deep learning method for single-cell RNA-seq data imputation
☆87Updated 2 years ago
Alternatives and similar repositories for deepimpute:
Users that are interested in deepimpute are comparing it to the libraries listed below
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- spatial transcriptome, single cell☆66Updated last year
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆89Updated 5 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆54Updated 9 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆75Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆90Updated 4 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆73Updated 3 weeks ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- repository containing analysis scripts and auxiliary files☆30Updated 4 years ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆100Updated last year
- Identifying tumor cells at the single-cell level using machine learning☆46Updated 2 months ago
- ☆36Updated 2 years ago
- Geometry-preserving random sampling☆77Updated 2 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆56Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 8 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 3 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆61Updated last year
- ☆26Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆57Updated 3 months ago
- ACTIONet single-cell analysis framework☆36Updated 4 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆67Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆50Updated 4 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆108Updated 11 months ago
- ☆98Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆112Updated 4 months ago
- ☆24Updated 4 years ago
- Accurate and robust imputation of scRNA-seq data☆94Updated 5 years ago
- ☆83Updated 2 weeks ago
- ☆34Updated 5 months ago