lanagarmire / deepimpute

Related projects ⓘ

Alternatives and complementary repositories for deepimpute

• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆48Updated 2 years ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆52Updated 7 months ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆38Updated last year
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆73Updated 10 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆64Updated last year
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆86Updated 3 months ago
• LuyiTian / sc_mixology
  This contains the dataset for comparing scRNA-seq analysis methods
  ☆89Updated 4 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆37Updated last month
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆75Updated last week
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆51Updated 6 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆110Updated 2 months ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆104Updated 9 months ago
• zcang / SpaOTsc
  ☆44Updated last year
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆59Updated 6 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆105Updated last month
• xuyungang / scIGANs
  Generative adversarial networks for single-cell RNA-seq imputation
  ☆36Updated 4 years ago
• zpliulab / GENELink
  ☆26Updated 2 years ago
• rajewsky-lab / novosparc
  ☆126Updated 11 months ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆91Updated last year
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆39Updated 3 years ago
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆46Updated 4 months ago
• jlakkis / CarDEC
  ☆19Updated 3 years ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆149Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆36Updated last month
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆55Updated 3 weeks ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆34Updated 2 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆66Updated last year
• AltschulerWu-Lab / scScope
  ☆48Updated 5 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆74Updated 10 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆60Updated last year