ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
☆29Oct 11, 2019Updated 6 years ago
Alternatives and similar repositories for imrep
Users that are interested in imrep are comparing it to the libraries listed below
Sorting:
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆53Oct 29, 2024Updated last year
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Apr 17, 2024Updated last year
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Nov 1, 2018Updated 7 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 2 months ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆31Dec 16, 2025Updated 2 months ago
- ☆38Nov 27, 2023Updated 2 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- ⚙️ A lightweight immune repertoire browser☆27Dec 10, 2019Updated 6 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆154Aug 20, 2024Updated last year
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- ☆18Oct 4, 2022Updated 3 years ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆54Apr 3, 2024Updated last year
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Updated this week
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Oct 6, 2021Updated 4 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Feb 22, 2026Updated last week
- ☆25Aug 5, 2025Updated 6 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- SeqMonk NGS visualisation and analysis tool☆51Nov 10, 2025Updated 3 months ago
- 🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!☆152Feb 22, 2026Updated last week
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- IMGT segment library converted to RepSeq.IO JSON format☆13Mar 21, 2023Updated 2 years ago
- ☆48Jan 7, 2025Updated last year
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago