mandricigor / imrepLinks
ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
☆29Updated 6 years ago
Alternatives and similar repositories for imrep
Users that are interested in imrep are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- ☆18Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Core functionality of the CGAT code☆33Updated 2 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- simplified cellranger for long-read data☆19Updated last month
- RAGE-seq scripts☆18Updated 4 years ago
- ☆19Updated 7 years ago