mcalgaro93 / sc2metaLinks
Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data"
☆10Updated 5 years ago
Alternatives and similar repositories for sc2meta
Users that are interested in sc2meta are comparing it to the libraries listed below
Sorting:
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Linear Decomposition Model☆25Updated 2 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- ☆20Updated 2 months ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆19Updated 2 weeks ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated last year
- ☆13Updated 2 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 2 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last month
- Representation and manipulation of genomic intervals☆46Updated 2 weeks ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 5 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- fastqcr: Quality Control of Sequencing Data☆74Updated 2 years ago
- Easy to define segments in y-axis for 'ggplot2'.☆27Updated 6 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- ☆27Updated 2 years ago
- ☆10Updated 5 years ago
- Drawing 'dendrogram' using 'ggtree'☆13Updated 5 months ago
- Omics Data Analysis Tools☆12Updated 10 months ago
- STAMPS 2018 course☆15Updated 7 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 2 months ago
- R interface to 'Gos'☆39Updated 2 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 10 months ago
- User-Friendly R Package for Supervised Machine Learning Pipelines☆59Updated last month
- K-mer Counting for Biological Sequence Analysis☆27Updated 6 years ago
- Course website for Genomic Data Visualization 2024☆26Updated last year
- ☆19Updated 2 years ago
- ☆29Updated last year