Alternatives and similar repositories for sc2meta

Users that are interested in sc2meta are comparing it to the libraries listed below

• aametwally / MetaLonDA
  METAgenomic LONgitudinal Differential Abundance method
  ☆16Updated 5 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆19Updated 3 years ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated last month
• himelmallick / Tweedieverse
  Differential analysis of multi-omics data based on the Tweedie distribution
  ☆28Updated last year
• guokai8 / microbial
  Do microbiome analysis with dada2 and phyloseq object
  ☆14Updated 10 months ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated 2 weeks ago
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated 2 years ago
• YuLab-SMU / ggtreeDendro
  Drawing 'dendrogram' using 'ggtree'
  ☆13Updated 4 months ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated 2 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 weeks ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆19Updated this week
• csoneson / treeclimbR
  ☆20Updated last month
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆12Updated 9 months ago
• gtonkinhill / TCGA_analysis
  ☆27Updated 2 years ago
• jsychong / MetaboAnalystR
  ☆10Updated 5 years ago
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆28Updated 5 years ago
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated 3 months ago
• shihuang047 / age-prediction
  ☆20Updated 4 years ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 6 years ago
• SchlossLab / mikropml
  User-Friendly R Package for Supervised Machine Learning Pipelines
  ☆59Updated this week
• statdivlab / tinyvamp
  ☆19Updated 2 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated last month
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 4 months ago
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• SchlossLab / Sze_Obesity_mBio_2016
  ☆12Updated 7 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated 2 years ago