Alternatives and similar repositories for sc2meta

Users that are interested in sc2meta are comparing it to the libraries listed below

• aametwally / MetaLonDA
  METAgenomic LONgitudinal Differential Abundance method
  ☆16Updated 5 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆25Updated 2 years ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated 3 months ago
• YuLab-SMU / ggtreeDendro
  Drawing 'dendrogram' using 'ggtree'
  ☆13Updated 2 weeks ago
• guokai8 / microbial
  Do microbiome analysis with dada2 and phyloseq object
  ☆14Updated last year
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated 3 weeks ago
• himelmallick / Tweedieverse
  Differential analysis of multi-omics data based on the Tweedie distribution
  ☆28Updated last year
• csoneson / treeclimbR
  ☆20Updated 3 weeks ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆21Updated 4 years ago
• SchlossLab / mikropml
  User-Friendly R Package for Supervised Machine Learning Pipelines
  ☆60Updated 2 weeks ago
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated 2 years ago
• wejlab / MetaScope
  An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
  ☆20Updated last week
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆13Updated 11 months ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 3 months ago
• WeersmaLabIBD / Microbiome
  Microbiome research
  ☆21Updated 3 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago
• jsychong / MetaboAnalystR
  ☆10Updated 6 years ago
• shihuang047 / age-prediction
  ☆20Updated 5 years ago
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆30Updated 2 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆29Updated 6 months ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 6 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 7 years ago
• gtonkinhill / TCGA_analysis
  ☆26Updated 2 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• cxli233 / ggpathway
  A tutorial for pathway visualization using tidyverse, igraph, and ggraph
  ☆60Updated last year
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆27Updated 6 years ago
• jtleek / sva-devel
  ☆29Updated last year
• statdivlab / tinyvamp
  ☆19Updated 2 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year