de-Boer-Lab / CisRegModelsLinks
Scripts for building computational models of gene regulation with tensorflow
☆27Updated 2 years ago
Alternatives and similar repositories for CisRegModels
Users that are interested in CisRegModels are comparing it to the libraries listed below
Sorting:
- Summary statistics for repertoires☆17Updated 2 years ago
- University of Cambridge PhD thesis☆15Updated 4 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 2 years ago
- ☆17Updated last year
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆16Updated 5 years ago
- ☆48Updated 2 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- Modelling DNA methylation profiles☆23Updated 4 years ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Updated 5 years ago
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 2 months ago
- ☆18Updated 2 months ago
- Code and simulations using biologically annotated neural networks☆21Updated 3 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Signed LD profile regression code☆17Updated 3 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- inference of transcription factor activity at the single cell level☆14Updated last month
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated last month
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- Code for Celia and Nils' immune aging project.☆9Updated 5 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆24Updated last year