Scripts for building computational models of gene regulation with tensorflow
☆28May 3, 2023Updated 3 years ago
Alternatives and similar repositories for CisRegModels
Users that are interested in CisRegModels are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- A short tutorial to using DL and keras for genomics with sequence data.☆16Dec 3, 2020Updated 5 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆14Apr 2, 2026Updated 5 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆19Jun 29, 2022Updated 4 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆37Mar 12, 2025Updated last year
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- ☆20Feb 25, 2025Updated last year
- Mediated Expression Score Regression (MESC)☆30Nov 4, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Aug 18, 2026Updated last month
- ☆14Aug 9, 2017Updated 9 years ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated 2 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 8 years ago
- Repo for "Evolution on rugged adaptive landscapes"☆12Oct 7, 2021Updated 4 years ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆14Sep 1, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Jul 14, 2025Updated last year
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- ☆10Dec 11, 2024Updated last year
- The analysis of the 1KCP☆17Dec 3, 2025Updated 9 months ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 5 years ago
- Spectra prediction software and GUI for anyone to use.☆10Oct 14, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Fast EM algorithm for a Probabilistic PCA model for Genotype data☆21Jan 14, 2022Updated 4 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 6 months ago
- Color DNA/RNA bases in terminal output☆22Aug 29, 2017Updated 9 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆85Oct 22, 2019Updated 6 years ago