Alternatives and similar repositories for SMILE

Users that are interested in SMILE are comparing it to the libraries listed below

• epigen / scifiRNA-seq
  ☆12Updated 4 years ago
• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆13Updated 2 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• vincenthahaut / FLASH-Seq
  ☆10Updated 3 years ago
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆15Updated 3 years ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• tanaylab / embflow
  ☆12Updated 2 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated last year
• OSU-BMBL / scGNN2.0
  ☆12Updated last year
• MarieOestreich / hCoCena
  ☆16Updated 8 months ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 4 months ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 7 months ago
• wulabupenn / scNT-seq
  Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
  ☆16Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• CellProfiling / SingleCellProteogenomics
  Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
  ☆13Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• epigen / scifiRNA-seq_publication
  The million-scale method for single-cell analysis
  ☆10Updated 2 years ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated 2 years ago
• alberlab / igm
  Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures
  ☆12Updated 2 years ago
• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated 3 months ago
• lareaulab / psix
  ☆16Updated last year
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 3 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 5 years ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆23Updated 3 years ago
• mqzhanglab / BSDE
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆10Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• leeprichman / ClonoCluster
  Combined clonality and transcriptome scRNAseq clustering method
  ☆11Updated 2 years ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 6 years ago