rpmccordlab / SMILELinks
SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
☆11Updated 2 years ago
Alternatives and similar repositories for SMILE
Users that are interested in SMILE are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- ☆12Updated 4 years ago
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- ☆10Updated 3 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆13Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆12Updated 2 years ago
- ☆12Updated last year
- ☆12Updated 2 years ago
- Perturb-seq analysis package☆14Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Updated 2 years ago
- ☆16Updated 5 months ago
- ☆8Updated 3 years ago
- python API to the CoGAPS NMF package☆19Updated 2 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆13Updated 2 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆23Updated 3 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆9Updated 3 years ago
- Paired-seq☆14Updated last year
- ☆9Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated last month
- ☆17Updated 2 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆10Updated 8 months ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆11Updated last year
- Gene Expression Decomposition and Integration☆18Updated 5 months ago
- BPNet manuscript code.☆12Updated 4 years ago