Alternatives and similar repositories for MethSCAn:

Users that are interested in MethSCAn are comparing it to the libraries listed below

• UPSUTER / GEMLI
  ☆30Updated last month
• lrylaarsdam / amethyst
  An analysis toolkit for single-cell methylation sequencing data
  ☆14Updated 3 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆36Updated last month
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• PoolLab / generecovery
  ☆29Updated last year
• songlab-cal / scquint
  ☆16Updated 9 months ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 8 months ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• wenweixiong / MARVEL
  ☆45Updated 7 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• lcmmichielsen / scHPL
  ☆34Updated 9 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 11 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 3 months ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆32Updated 3 years ago
• gxiaolab / scAllele
  ☆32Updated 10 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆18Updated last month
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆29Updated last month
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 2 months ago
• fmicompbio / adv_singlecell_2022
  Material for the "Advanced topics in single-cell analysis" course (2022 edition)
  ☆16Updated 2 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆40Updated 7 months ago
• rajewsky-lab / spacemake
  ☆40Updated this week
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆71Updated 10 months ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• aertslab / scATAC-seq_benchmark
  ☆16Updated last year
• cellatlas / cellatlas
  ☆16Updated 7 months ago
• andygxzeng / AMLHierarchies
  Analysis notebooks and data for AML hierarchies paper
  ☆16Updated last year
• Teichlab / sctk
  ☆35Updated 5 months ago
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆30Updated 2 years ago