anders-biostat / MethSCAnLinks
Python package with CLI for the analysis of single cell methylation data.
☆18Updated last year
Alternatives and similar repositories for MethSCAn
Users that are interested in MethSCAn are comparing it to the libraries listed below
Sorting:
- ☆33Updated last year
- ☆53Updated last year
- Create cisTarget databases☆55Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- scWGCNA☆61Updated 3 years ago
- Functional Inference of Gene Regulation☆51Updated last year
- ☆63Updated 5 years ago
- ☆33Updated 3 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- ☆82Updated 2 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆25Updated 3 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆40Updated 5 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆95Updated last week
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆32Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆48Updated 2 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 3 years ago
- ☆48Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- ☆34Updated 6 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆42Updated 2 months ago
- ☆90Updated 5 months ago
- ☆59Updated last year