Alternatives and similar repositories for MethSCAn

Users that are interested in MethSCAn are comparing it to the libraries listed below

• UPSUTER / GEMLI
  ☆32Updated 6 months ago
• wenweixiong / MARVEL
  ☆49Updated last year
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆17Updated 4 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• UcarLab / AMULET
  A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
  ☆31Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 6 months ago
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆28Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 11 months ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 7 months ago
• xmuhuanglab / eNet
  ☆12Updated 2 years ago
• cole-trapnell-lab / cicero-release
  ☆58Updated 11 months ago
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆29Updated 2 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• lhe17 / nebula
  ☆41Updated last month
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆52Updated last month
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• gxiaolab / scAllele
  ☆37Updated last year
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• quadbio / RNAseq_tutorial
  ☆29Updated 9 months ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆53Updated 3 years ago
• aertslab / ScoMAP
  ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.
  ☆27Updated 3 years ago
• lrylaarsdam / amethyst
  An analysis toolkit for single-cell methylation sequencing data
  ☆21Updated this week
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆21Updated last year
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 8 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 2 years ago