Python package with CLI for the analysis of single cell methylation data.
☆22Oct 29, 2024Updated 2 years ago
Alternatives and similar repositories for MethSCAn
Users that are interested in MethSCAn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆13Mar 22, 2024Updated 2 years ago
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆34Jan 29, 2026Updated 9 months ago
- ☆16Jul 22, 2025Updated last year
- ☆12Mar 12, 2024Updated 2 years ago
- ☆12Feb 16, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolkit for single-cell DNA methylation analysis.☆52May 25, 2026Updated 5 months ago
- Vignettes to process data and generate figures for the EPI-clone paper☆13May 21, 2025Updated last year
- ☆13Aug 6, 2025Updated last year
- ☆11Feb 11, 2021Updated 5 years ago
- Modelling DNA methylation profiles☆24Jul 16, 2020Updated 6 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆21Nov 19, 2020Updated 5 years ago
- ☆11Jan 22, 2026Updated 9 months ago
- Pipeline for processing and analyzing CiFi data☆12Sep 24, 2026Updated last month
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆29Dec 25, 2023Updated 2 years ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 4 years ago
- Toolkit for single-cell copy number analysis☆37Dec 15, 2025Updated 10 months ago
- A module for working with snap files in Python☆38May 5, 2020Updated 6 years ago
- Bayesian Clustering and Imputation of Single Cell Methylomes☆16Jul 16, 2020Updated 6 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆19Apr 18, 2023Updated 3 years ago
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 8 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆31Mar 28, 2019Updated 7 years ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Jul 9, 2026Updated 3 months ago
- A simple python package for doublet detection in scRNA-seq data. This repo is read-only, please visit GCS-ZHN/socube to submit issue and …☆10Mar 30, 2023Updated 3 years ago
- R package for DNA methylation analysis☆21Oct 2, 2026Updated 3 weeks ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆19Feb 6, 2026Updated 8 months ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- ☆15May 19, 2022Updated 4 years ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- ☆70Mar 23, 2026Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆21Dec 15, 2023Updated 2 years ago
- ☆13Jan 27, 2025Updated last year
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- ☆12Dec 10, 2025Updated 10 months ago
- ☆36Jul 20, 2026Updated 3 months ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆46Oct 11, 2026Updated 2 weeks ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆25Jan 26, 2024Updated 2 years ago