anders-biostat / MethSCAn
Python package with CLI for the analysis of single cell methylation data.
☆13Updated 6 months ago
Alternatives and similar repositories for MethSCAn
Users that are interested in MethSCAn are comparing it to the libraries listed below
Sorting:
- ☆31Updated 3 months ago
- An analysis toolkit for single-cell methylation sequencing data☆18Updated this week
- ☆49Updated 9 months ago
- interactive visualization of single-cell transcriptomes☆11Updated last year
- Easy and comprehensive biological network reconstruction and analysis☆28Updated 7 months ago
- ☆29Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 9 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- ☆41Updated last month
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 6 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Single-cell copy number calling and event history reconstruction.☆23Updated 4 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- ☆32Updated 5 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆33Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Single-cell Iso Prep☆16Updated last year
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆20Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- scWGCNA☆60Updated 2 years ago