sperfu / scFAN
Predicting transcription factor binding in single cells through deep learning
☆13Updated last year
Related projects: ⓘ
- scWGCNA☆53Updated last year
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆27Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- Fast motif matching in R☆41Updated 7 months ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆64Updated 3 weeks ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- SCDC☆42Updated last year
- ☆29Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆28Updated last year
- ☆38Updated last month
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆54Updated 4 months ago
- Single-Cell Inference of Class Switch Recombination☆15Updated last month
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆11Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 6 months ago
- A study to compare methods for clustering of scRNA-seq data☆41Updated 2 months ago
- Functional Inference of Gene Regulation☆33Updated 2 months ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆16Updated last year
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Unified access to several second-generation deconvolution methods☆51Updated last month
- ☆36Updated 3 years ago
- ☆21Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆42Updated 5 months ago
- Mapping the Functional Landscape of TCR Repertoire☆33Updated 2 years ago