sperfu / scFANLinks
Predicting transcription factor binding in single cells through deep learning
☆13Updated 3 years ago
Alternatives and similar repositories for scFAN
Users that are interested in scFAN are comparing it to the libraries listed below
Sorting:
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆47Updated 3 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31Updated 8 months ago
- scWGCNA☆61Updated 3 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- ☆43Updated 5 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 6 months ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- Normalize CITEseq Data☆67Updated 3 months ago
- Multi-sample Unified Discriminant ANalysis☆75Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆91Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆38Updated 3 years ago
- ☆62Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Updated last year
- ☆30Updated 7 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 3 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 2 weeks ago
- ☆56Updated 5 years ago
- ☆33Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- ☆48Updated 2 months ago
- Fast motif matching in R☆46Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year