YosefLab / TRAPeS
TCR Reconstruction Algorithm for Paired-End Single cell
☆14Updated 5 years ago
Alternatives and similar repositories for TRAPeS:
Users that are interested in TRAPeS are comparing it to the libraries listed below
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated 2 years ago
- ☆33Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- ☆49Updated 8 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- ☆32Updated 5 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- ☆28Updated 6 years ago
- ☆11Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- scRNA-seq cell type identification☆44Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- ☆35Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last month
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago