TCR Reconstruction Algorithm for Paired-End Single cell
☆14Oct 13, 2019Updated 6 years ago
Alternatives and similar repositories for TRAPeS
Users that are interested in TRAPeS are comparing it to the libraries listed below
Sorting:
- ☆20May 20, 2021Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Nov 12, 2018Updated 7 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Nov 25, 2020Updated 5 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Jul 13, 2020Updated 5 years ago
- singleCellNet in Python☆15Updated this week
- ☆16Jun 17, 2021Updated 4 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- ☆20Jun 26, 2025Updated 8 months ago
- ☆18Sep 13, 2022Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Matplotlib Backend for Altair Visualization Library☆16Dec 2, 2020Updated 5 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- CAST package☆42Oct 26, 2024Updated last year
- A Python package for gene network analysis☆32Jun 22, 2022Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19May 24, 2021Updated 4 years ago
- Code for reproducing the Sei manuscript results☆17Jan 25, 2022Updated 4 years ago
- A module for working with snap files in Python☆37May 5, 2020Updated 5 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 4 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated 2 weeks ago
- Snakemake pipeline for microexon discovery and quantification☆20Jan 16, 2025Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 3 months ago
- Single Cell Consensus Clustering with Speed☆20Dec 12, 2022Updated 3 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Jan 30, 2026Updated last month
- Cell-specific Network Constructed by Single-cell RNA Sequencing Data☆21Dec 15, 2018Updated 7 years ago